View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6237_low_5 (Length: 452)
Name: NF6237_low_5
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 293 - 433
Target Start/End: Original strand, 9062186 - 9062334
Alignment:
| Q |
293 |
tcatagcacacataaacttgcaaatatgatcacaatgtctccactgaccttat-----------gtgttggcttcgacaataagtaatatatgtctcaag |
381 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9062186 |
tcatagcacacataaacttgcaaatat---cacaatgtctccactgaccttatgtgtggattatgtgttggcttcgacaataagtaatatatgtctcaag |
9062282 |
T |
|
| Q |
382 |
gtcatttgttttaatcattaatttcaaagacagcactaagcaatattaaagc |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9062283 |
gtcatttgttttaatcattaatttcaaagacagcactaagcaatattaaagc |
9062334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 9061045 - 9061117
Alignment:
| Q |
66 |
ttcgtaaaattattattctctttcttgtacttatattcatatgttgaaatgaactaaagtggtcgtgaataat |
138 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9061045 |
ttcgtaaaattattattctctttcttttacttatattcatatgttgaaatgaactaaagtggtcgtgaataat |
9061117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 9062028 - 9062134
Alignment:
| Q |
138 |
tggagagtatttgtacacagaatagcaacgtttcacccacacacnnnnnnnnnn----cacatattagctgcgagttattgacaagaatatgatgttaaa |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9062028 |
tggagagtatttgtacacagaatagcaacgtttcacccacacaaaaaaaaaaaaaaaacacatattagctgcgagttattgacaagaatatgatgttaaa |
9062127 |
T |
|
| Q |
234 |
gtccacc |
240 |
Q |
| |
|
||||||| |
|
|
| T |
9062128 |
gtccacc |
9062134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 9060979 - 9061014
Alignment:
| Q |
21 |
cttttgtggtggtaatatatttctttttaacttctt |
56 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9060979 |
cttttgtggtggtaatatatttcattttaacttctt |
9061014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 19477508 - 19477552
Alignment:
| Q |
5 |
ttatactaggaaggaccttttgtggtggtaatatatttcttttta |
49 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||||||||| ||||| |
|
|
| T |
19477508 |
ttatgctaggaaggactttttgttgtggtaatatatttcatttta |
19477552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University