View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6237_low_6 (Length: 447)
Name: NF6237_low_6
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 328
Target Start/End: Original strand, 15648937 - 15649263
Alignment:
| Q |
2 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15648937 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattta |
15649036 |
T |
|
| Q |
102 |
ttaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtaca |
201 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15649037 |
ataatttttttggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtaca |
15649136 |
T |
|
| Q |
202 |
gtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccatannnnnnnaattgtgctacttgcaattgatggtattg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
15649137 |
gtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccatatttttttaattgtgctacttgcaaatgatggtattg |
15649236 |
T |
|
| Q |
302 |
tatcctcgtaagtctatgttttgtaac |
328 |
Q |
| |
|
| |||||||||||||| |||||||||| |
|
|
| T |
15649237 |
tttcctcgtaagtctaagttttgtaac |
15649263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 15658182 - 15658448
Alignment:
| Q |
2 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgac---cat |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15658182 |
gcacaatataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcatcattgaattcatcttcagatttcaacacttctcgacgaccat |
15658281 |
T |
|
| Q |
99 |
ttattaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagt |
198 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15658282 |
ttattaattttttcggaatttttggtccattcttaatcacaagccaaattttatagtcaactgattgtatgaatatctttgtacgctctttccattcagt |
15658381 |
T |
|
| Q |
199 |
acagtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
15658382 |
acagtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaatgatggttgtgtccata |
15658448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 15611298 - 15611564
Alignment:
| Q |
2 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattta |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||| || ||| ||||| || |
|
|
| T |
15611298 |
gcacaatataaaatatttttggcttttgcttctcgttccatgatcttcttatcttcatcattgaattcatcttcagatttctccaactcttcaccatgta |
15611397 |
T |
|
| Q |
102 |
ttaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtaca |
201 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
15611398 |
ttattttttttggaattttcggtccattcttaatcacaagccaaagatcgaagtcaacggattgtatgaatatctttatacgctccttccactcagtaca |
15611497 |
T |
|
| Q |
202 |
gtttgt---accatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
265 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||| |||| | ||||||||||| |
|
|
| T |
15611498 |
atttgttgtaccatcgaagtatggtggctttgaaatggatctcccttccacgatcattgtgtccata |
15611564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 15536942 - 15537189
Alignment:
| Q |
2 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattta |
101 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||| |
|
|
| T |
15536942 |
gcacaatataaaatagttttggcttttgcttctagttccatgttcttcatatcttcatcattgaattcatctaccgatttcaacacttcttcaccattta |
15537041 |
T |
|
| Q |
102 |
ttaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtaca |
201 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||| | ||| ||| |||||||||||| |||| || | || |||| ||||| | |
|
|
| T |
15537042 |
ttaatttttttggaagttttggtccattctcaatcacaagccaaacttcgaagttaacagattgtatgaatgtcttcataggttccctccactcagttaa |
15537141 |
T |
|
| Q |
202 |
gtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaac |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15537142 |
atttgtaccatcgaagtatggtggctttgaaacggatcttccttcaac |
15537189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 2 - 265
Target Start/End: Original strand, 15628380 - 15628649
Alignment:
| Q |
2 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattta |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||| | || ||||| || |
|
|
| T |
15628380 |
gcacaacataaaatatttttggcttttgcttctagttccacgttcttcttatcttcaccattgaattcatcttcagatttctctgatgctataccatcta |
15628479 |
T |
|
| Q |
102 |
ttaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtaca |
201 |
Q |
| |
|
| | ||||| |||||||||||||||||||||||||| | | ||||||| |||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
15628480 |
tcattattttgggaatatttggtccattcttaatcacaagccagagatcgaagtcaacggattgtatgaatatctttatacgctccttccattcagtaca |
15628579 |
T |
|
| Q |
202 |
gt------ttgtaccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
265 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
15628580 |
atttgttgttgtaccatcgaagtatggtggctttgaaatggatctcccttccacgatcgttgtgtccata |
15628649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 2 - 249
Target Start/End: Original strand, 15523861 - 15524108
Alignment:
| Q |
2 |
gcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattta |
101 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||| |||||||| |||| ||||||| ||||||||||||||| | |||| ||||||| |||||||| |
|
|
| T |
15523861 |
gcacaacataaaatatttttagcttttacttctggttccatgatcttcctatcttcatcattgaattcatctatcgtcttcagcacttcttcaccattta |
15523960 |
T |
|
| Q |
102 |
ttaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtaca |
201 |
Q |
| |
|
||| |||| |||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||| || | || |||| ||||| | |
|
|
| T |
15523961 |
ttattttttttggaagttttggtccattctcaatcacaagccatacttcaaagtcaacagattgtatgaatatcttcataagttccctccactcagttaa |
15524060 |
T |
|
| Q |
202 |
gtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaac |
249 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15524061 |
atttgtaccatcaaagtatggtggctttgaaatggatcttccttcaac |
15524108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 15504300 - 15504564
Alignment:
| Q |
1 |
agcacaagataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaacacttctcgaccattt |
100 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||| | || ||||||| |||||||||| |||||||||||||| || ||| ||||| | |
|
|
| T |
15504300 |
agcacaacgtaaaatatgtttggcttttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttcaccaattcattaccatct |
15504399 |
T |
|
| Q |
101 |
attaannnnnnnggaatttttggtccattcttaatcacaagccaaactctgtagtcaactgattgtatgaatatctttgtacgctctttccattcagtac |
200 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| || ||| || |||||||| ||| |
|
|
| T |
15504400 |
atcattgttttgggaatttttggtccattcttaatcacaagacaaagatcaaagtcaatggattgtatgaatatcattatactttccttccattccgtat |
15504499 |
T |
|
| Q |
201 |
agtttgtaccatcgaagtatggtggctttgaaatggatcttccttcaacgaacgttgtgtccata |
265 |
Q |
| |
|
| || ||||||||||| ||||||||||||||||||||| ||||||| || |||||||||||| |
|
|
| T |
15504500 |
aattgttaccatcgaagaatggtggctttgaaatggatcgtccttcattgatggttgtgtccata |
15504564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 15649319 - 15649364
Alignment:
| Q |
390 |
gtcgttgggctcaagaatatgattttgaatttgaaagattccttcc |
435 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15649319 |
gtcgttgggctcaagaatatgatttttaatttgaaagattccttcc |
15649364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University