View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_8 (Length: 415)
Name: NF6237_low_8
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 49 - 405
Target Start/End: Complemental strand, 11034794 - 11034441
Alignment:
| Q |
49 |
ttgacgaaatctatgttatatttgagctgtccgaatcggatggaatattcatacattggtaattgtatgaatagaacttcacactcacaggatgtgaatt |
148 |
Q |
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| T |
11034794 |
ttgacgaaatctatgttatatatgagttgtccaaatcggatggaatactcatacattggtaattgtatgaatagaacttcaaattcacaggatgtgaatt |
11034695 |
T |
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| Q |
149 |
ctttctatgttggtagctatcgcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcacttctttggatgttgaaga |
248 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11034694 |
ctttctatgttggtagctatggtaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcacttctttggatgttgaaga |
11034595 |
T |
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| Q |
249 |
tgatggtgctgatcnnnnnnnnnnnnnnnnnntttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgt |
348 |
Q |
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| T |
11034594 |
tgatggtgctgatc---acaacaacaacaacatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgt |
11034498 |
T |
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| Q |
349 |
aaattagatgtttcgtatgcgtatgcggagctcgatcaatataaccagcctctctgt |
405 |
Q |
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| T |
11034497 |
aaattagatgtttcgtatgcgtatgcggagctcgatcaaaataaccaggctcactgt |
11034441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11009413 - 11009179
Alignment:
| Q |
17 |
atcatcgatacaaaaactacactaatcatatgttgacgaaatctatgttatatttgagctgtccgaatcggatggaatattcatacattggtaattgtat |
116 |
Q |
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| T |
11009413 |
atcatcgatacaaaaactacactaatcatatgttgacgaaatctatgttatatgtgagctgtccgaatcggatggaatattcatacattggtaattgtat |
11009314 |
T |
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| Q |
117 |
gaatagaacttcacactcacaggatgtgaattctttctatgttggtagctatcgcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacag |
216 |
Q |
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| T |
11009313 |
gaatagaacttcatattcacaggatgtgaattctttctatgttggtggctatggtaaatctctgttggaatttgggttgggagacgggtgtcatatagag |
11009214 |
T |
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| Q |
217 |
tttatgtatctcacttctttggatgttgaagatgatgg |
254 |
Q |
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| T |
11009213 |
tttatgtatctca---cttgggatgttgaagatgatgg |
11009179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 295 - 351
Target Start/End: Complemental strand, 10921684 - 10921628
Alignment:
| Q |
295 |
atccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
351 |
Q |
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| T |
10921684 |
atccgtcgtgagatcttttatggatttgaactttcttggctcaacagtttttgtaaa |
10921628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 10975435 - 10975216
Alignment:
| Q |
31 |
aactacactaatcatatgttgacgaaatctatgttatatttgagctgtccgaatcggatggaatattcatacattggtaattgtatgaatagaacttcac |
130 |
Q |
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| T |
10975435 |
aactacactgaccatatattgacgaaatctatgttatacgtgagttgtccaaattggacggaatactcatacgttggtaactgtatgagtagtggttcat |
10975336 |
T |
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| Q |
131 |
actcacaggatgtgaattctttctatgttggtagctatcgcaaatctctgtcggaattcgggctgggagatgggtgtcgtatacagtttatgtatctcac |
230 |
Q |
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| T |
10975335 |
actcacaacacgggaatcgtttctatgttggtcgctacagcaaatctctttcggaattggtgttgaaagacacttgtcgtgtagagtttatgtatctcac |
10975236 |
T |
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| Q |
231 |
ttctttggatgttgaagatg |
250 |
Q |
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| T |
10975235 |
atctttaaattttgaagatg |
10975216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 11000378 - 11000444
Alignment:
| Q |
285 |
ttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
351 |
Q |
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|||| ||||||| |||||| |||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
11000378 |
ttgcacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagcctttgtaaa |
11000444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 351
Target Start/End: Original strand, 11003354 - 11003424
Alignment:
| Q |
281 |
tttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
351 |
Q |
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| T |
11003354 |
tttcttgtacggatattcatcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaa |
11003424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 342
Target Start/End: Complemental strand, 11009139 - 11009103
Alignment:
| Q |
306 |
gatgttttatggatttgaactttcttggctcaacagt |
342 |
Q |
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| T |
11009139 |
gatgtattatggatttgaactttcttggctcaacagt |
11009103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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