View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6237_low_9 (Length: 407)
Name: NF6237_low_9
Description: NF6237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6237_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 397
Target Start/End: Complemental strand, 37087387 - 37086976
Alignment:
| Q |
16 |
ctaagttgtgctcactttgtagcttaagtttgttagcatagttggttttgcactgcttcatatgtgttgtttcattgcagttatattatatatatggagt |
115 |
Q |
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| T |
37087387 |
ctaagttgtgctcactttgtagcttaagtttgttagcatagttggttttgcgctgcttcatatgcgttgtttcattgcagttatatcatatatatggagt |
37087288 |
T |
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| Q |
116 |
agaaaaagct-------atgtgctgctatatatgccatagaaaaagctgttgtggagttaaattgaaagaacgtttggatagaaagtgactc--tgatgg |
206 |
Q |
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| T |
37087287 |
agaaaaagcttgctgctatgtgctgctatatatgccatagaaaaagctgttgtggagttaaattgaaagaacgtttggatagaaagtgactcagtgatgg |
37087188 |
T |
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| Q |
207 |
tagtgagagctttcaacatgaactctcctgtaccttggatttgtatta---------------------agggtttaggccctctctaagggttcaacca |
285 |
Q |
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| T |
37087187 |
tagtgagagctttcaacatgaactctcctgtaccttggatttgtattatggggtaacttctttgtattaagggtttaggccctctctaagggttcaacta |
37087088 |
T |
|
| Q |
286 |
tcaatttctcatcaatttaatctctagttaaactataaaaatatattaaatagtccataaagtgtactttttgtagtataaatgtttggaagtgttactt |
385 |
Q |
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| T |
37087087 |
tcaatttctcatcaatttaatctctagttaaactataaaaatatattaaatagtccataaagtgtactttttgtagtataaatgtttggaagtgttactt |
37086988 |
T |
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| Q |
386 |
tttgtagtataa |
397 |
Q |
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| T |
37086987 |
tttgtagtataa |
37086976 |
T |
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