View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6238_high_3 (Length: 260)
Name: NF6238_high_3
Description: NF6238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6238_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 46018788 - 46018550
Alignment:
| Q |
1 |
tacaatctctcaatccgcaggaaaaggtttgtatttgtatcctactccctttggctgtgaatatttggagtgaactttatatggattcttaaattaaagt |
100 |
Q |
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| T |
46018788 |
tacaatctctcaatccgcaggaaaaggtttgtatttgtatcctactccctttggctgtgaatatttggagtgaactttatatggattcttaaattaaagt |
46018689 |
T |
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| Q |
101 |
gatttatatctttaccagaatataattgtgtatatatagtactagtacctcttaacctgatatcagcaaaacacttctgtcattggcagcatttggtaga |
200 |
Q |
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| T |
46018688 |
gatttatatc-ttaccagaatataattgtg--tatatagtactagtacctcttaacctgatatcagcaaaacacttctgtcattggcagcgtttggtaga |
46018592 |
T |
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| Q |
201 |
agaagttaagcaacatgcttacaaaaatttgaatgatctaaa |
242 |
Q |
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| T |
46018591 |
agaagttaagcaacatgcttacaaaaatttgaatgatctaaa |
46018550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 46031367 - 46031188
Alignment:
| Q |
46 |
tccctttggctgtgaatatttggagtgaactttatatggattcttaaattaaagtgatttatatctttaccagaatataattgtgtatatatagtactag |
145 |
Q |
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| T |
46031367 |
tccctttggctgtgaatattcggagtggaccttatatggattcttaaatt-tagtgattcatatc-ttaccaaaatatagttgtg----tatagtactca |
46031274 |
T |
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| Q |
146 |
tacctcttaacctgatatcagcaaaacacttctgtcattggcagcatttggtagaagaagttaagcaacatgcttacaaaaatttgaatgat |
237 |
Q |
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| T |
46031273 |
tatctctt------atatgatcaaaacacttgtgtcattgacagcggttggtggaaagagttaagcaacatgcttacaaatatttcaatgat |
46031188 |
T |
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