View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6238_high_5 (Length: 251)
Name: NF6238_high_5
Description: NF6238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6238_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 46018966 - 46019209
Alignment:
| Q |
1 |
ctattttctattttcccaaagccaaaaatcatatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaa |
100 |
Q |
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| T |
46018966 |
ctattttctattttcccaaagccaaaaatcatatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaa |
46019065 |
T |
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| Q |
101 |
taacatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccga |
200 |
Q |
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| T |
46019066 |
taatatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaaatccttaatagtgtgtattccatccaa |
46019165 |
T |
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| Q |
201 |
ggccaactgcttgtcaagtgttccatctctacgtattcatctca |
244 |
Q |
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| T |
46019166 |
ggccaactgcttgtcaagtgttccatctctacgtattcctctca |
46019209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 220
Target Start/End: Original strand, 46031701 - 46031821
Alignment:
| Q |
100 |
ataacatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccg |
199 |
Q |
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| T |
46031701 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
46031800 |
T |
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| Q |
200 |
aggccaactgcttgtcaagtg |
220 |
Q |
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| T |
46031801 |
atgccaacagcttgtcaagtg |
46031821 |
T |
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