View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6238_low_2 (Length: 413)
Name: NF6238_low_2
Description: NF6238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6238_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 43194696 - 43195103
Alignment:
| Q |
1 |
acttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctcatccttctctttcaaagatccaccatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194696 |
acttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctcatccttctctttcaaagatccaccatg |
43194795 |
T |
|
| Q |
101 |
taactcttggcgtttctttctcttctcttcctccgtcaacgaaggaacattctcgacagcgcgaatagcagagacaagatcccccgcaacagacggagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194796 |
taactcttggcgtttctttctcttctcttcctccgtcaacgaaggatcattctcgatagcgcgaatagcagagacaagatcccccgcaacagacggagca |
43194895 |
T |
|
| Q |
201 |
gcagaagcagcaacaacatcacttggttgagcacaatcaggacacaaccaatcgagcatttcacttgttgttggaacaacagggagacaaggagcatgcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194896 |
gcagaagcagcaacaacatcacttggttgagcacaatcaggacacaaccaatcgagcatttcacttgttgttggaacaacagggagacaaggagcatgcc |
43194995 |
T |
|
| Q |
301 |
atggtgttgtgcaggttttgcaatgaagtgtttcggtttctgatggtttttgtttgcagaccatgcatacaccgtcagcgtcacaaggaaggtggtgagt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194996 |
atggtgttgtgcaggttttgcaatgaagtgtttcggtttctgatggtttttgtttgcaaaccatgcatacaccgtcagcgtcacaaggaaggtggtgagt |
43195095 |
T |
|
| Q |
401 |
gatgatgt |
408 |
Q |
| |
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|||||||| |
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|
| T |
43195096 |
gatgatgt |
43195103 |
T |
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