View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6238_low_8 (Length: 209)
Name: NF6238_low_8
Description: NF6238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6238_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 8497751 - 8497578
Alignment:
| Q |
20 |
gaactttcatgaagtgatctcagaagggaggcattttcatgagcttcttcgcgaagtcctttatctaatttatgtatttctgcttcaagctctaacttga |
119 |
Q |
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| T |
8497751 |
gaactttcatgaagtgatctcagaagggaggcattttcatgagcttcttcgcgaagtcctttatctaatttgtgtatttctgcttcaagctctaacttga |
8497652 |
T |
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| Q |
120 |
atttctcccactgttgagatttcataagaatcacctcttgtattttttgctcactttcctcctttacagttctt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8497651 |
atttctcccactgttgagatttcataagaatcacctcttgtattttttgctcactttcctcctttacagttctt |
8497578 |
T |
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