View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_high_14 (Length: 244)
Name: NF6239_high_14
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 93 - 228
Target Start/End: Original strand, 823180 - 823315
Alignment:
| Q |
93 |
tcaacaaagttaattggcacttgaatataacttaccatgattgttaataaataaaaattatattctccaaatcatggaagagttgtctctctataattga |
192 |
Q |
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| T |
823180 |
tcaacaaagttaattggcacttgaatataacttaccatgattgttaataaataaaaattatattctccaaatcatggaagagttgtctctctataattga |
823279 |
T |
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| Q |
193 |
gccacatgtataaacgtaaggtggatctaaaaggtg |
228 |
Q |
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| T |
823280 |
gccacatgtataaacgtaaggtggatctaaaaggtg |
823315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 823111 - 823177
Alignment:
| Q |
1 |
tcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataagttatttatctctctc |
67 |
Q |
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| T |
823111 |
tcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataagttatttatctctctc |
823177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 9413046 - 9412980
Alignment:
| Q |
1 |
tcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataagttatttatctctctc |
67 |
Q |
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| T |
9413046 |
tcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataagttatttctctctctc |
9412980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 199
Target Start/End: Complemental strand, 5893345 - 5893250
Alignment:
| Q |
104 |
aattggcacttgaatataacttaccatgattgttaataaataaaaattatattctccaaatcatggaagag-ttgtctctctataattgagccacat |
199 |
Q |
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| T |
5893345 |
aattggcacttgaataaaacctactatgatcgttaatatataataa-catatactccagattatggaaaagcttttctctctataatggagccacat |
5893250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 35105579 - 35105662
Alignment:
| Q |
145 |
aaaaattatattctccaaatcatggaagagttgtctctctataattgagccacatgtataaacgtaaggtggatctaaaaggtg |
228 |
Q |
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| T |
35105579 |
aaaaaatatatactccaaattgtggaaggattttctctctataattgagccacatgtagaaatttaaggtggttctaaaaggtg |
35105662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 35105010 - 35105073
Alignment:
| Q |
88 |
gtgcatcaacaaagtta--attggcacttgaatataacttaccatgattgttaataaataaaaa |
149 |
Q |
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| T |
35105010 |
gtgcatcaacaaagttataattgacacatgaataaaacatacaataattgttaataaataaaaa |
35105073 |
T |
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