View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6239_high_19 (Length: 212)

Name: NF6239_high_19
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6239_high_19
NF6239_high_19
[»] chr6 (17 HSPs)
chr6 (11-90)||(12163182-12163261)
chr6 (11-87)||(12163632-12163708)
chr6 (11-90)||(12163281-12163360)
chr6 (14-63)||(12164229-12164278)
chr6 (11-69)||(12163362-12163420)
chr6 (29-82)||(12210680-12210733)
chr6 (14-90)||(12163470-12163546)
chr6 (14-69)||(12163710-12163765)
chr6 (14-69)||(12210753-12210808)
chr6 (14-63)||(12163971-12164020)
chr6 (35-87)||(12192233-12192285)
chr6 (14-69)||(12163551-12163606)
chr6 (11-66)||(12163683-12163738)
chr6 (41-87)||(12179083-12179129)
chr6 (11-66)||(12163524-12163579)
chr6 (29-90)||(12211086-12211147)
chr6 (14-66)||(12163335-12163387)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 12163261 - 12163182
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12163261 ttatacttatacactggtggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 12163182  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 12163708 - 12163632
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggctt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||    
T  12163708 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggtggtgggggagatgggtatttatatggctt 12163632  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 12163360 - 12163281
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |  ||||| |||||||||||    
T  12163360 ttatacttgtaaactggtggaggaggtgacttgtacttgtaaactggtggtggtggagatggatatttatatggcttctt 12163281  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12164278 - 12164229
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtgg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12164278 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggcggtgg 12164229  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 12163420 - 12163362
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||    
T  12163420 ttatacttgtacaccggtggaggaggtgatttgtacttgtaaactggtggtggaggaga 12163362  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 12210733 - 12210680
Alignment:
Q  29 ggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtat 82  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  12210733 ggaggaggtgatttgtacttgtatactggtggtggaggagaagggtatttgtat 12210680  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 12163546 - 12163470
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    |||||||| || || || |||||||||||||||||||||||||| ||||| ||||| | |||||| |||||||||||    
T  12163546 tacttgtacaccggtggtggaggtgatttgtacttgtaaactggcggtggtggagatgggtatttatatggcttctt 12163470  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12163765 - 12163710
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||    
T  12163765 tacttgtaaactgggggaggaggtgacttatacttgtaaactggtggtggaggaga 12163710  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12210808 - 12210753
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  12210808 tacttgtaaactgggggaggaggtgacttgtacttgtaaactggtggtgggggaga 12210753  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12164020 - 12163971
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtgg 63  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  12164020 tacttgtaaactgggggaggaggtgacttgtacttgtaaactggtggtgg 12163971  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 12192285 - 12192233
Alignment:
Q  35 ggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggctt 87  Q
    |||||||| |||||||||||||| ||||| || ||||||||||||||||||||    
T  12192285 ggtgatttatacttgtaaactggtggtggtggggaagcgtatttgtatggctt 12192233  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12163606 - 12163551
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    |||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||    
T  12163606 tacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggaga 12163551  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12163738 - 12163683
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggagg 66  Q
    ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||    
T  12163738 ttatacttgtaaactggtggtggaggagatttatacttgtaaactggaggaggagg 12163683  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 12179129 - 12179083
Alignment:
Q  41 ttgtacttgtaaactggaggtggaggagaagcgtatttgtatggctt 87  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  12179129 ttgtatttgtaaactggtggtggtggagaagcgtatttgtatggctt 12179083  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12163579 - 12163524
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggagg 66  Q
    ||||||||||||||||| || ||||| |||||||||||||| || || ||||||||    
T  12163579 ttatacttgtaaactggtggtggaggagatttgtacttgtacaccggtggtggagg 12163524  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 12211147 - 12211086
Alignment:
Q  29 ggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    |||||||| ||||| |||||||||||||| ||||| ||||| | ||| |||||||| |||||    
T  12211147 ggaggaggagatttatacttgtaaactgggggtggtggagatgggtacttgtatggtttctt 12211086  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12163387 - 12163335
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggagg 66  Q
    |||||||||||||| || ||||| ||||| |||||||||||||| || |||||    
T  12163387 tacttgtaaactggtggtggaggagatttatacttgtaaactggtggaggagg 12163335  T

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