View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6239_high_7 (Length: 302)

Name: NF6239_high_7
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6239_high_7
NF6239_high_7
[»] chr2 (8 HSPs)
chr2 (174-298)||(2596010-2596134)
chr2 (174-298)||(2588935-2589059)
chr2 (177-298)||(2576888-2577009)
chr2 (177-298)||(2581324-2581445)
chr2 (45-144)||(2595845-2595944)
chr2 (53-144)||(2576728-2576819)
chr2 (94-144)||(2581205-2581255)
chr2 (94-144)||(2588819-2588869)
[»] chr7 (1 HSPs)
chr7 (174-296)||(46769374-46769496)
[»] chr8 (2 HSPs)
chr8 (174-298)||(29157051-29157175)
chr8 (48-144)||(29156889-29156985)
[»] chr6 (2 HSPs)
chr6 (174-298)||(30399126-30399250)
chr6 (45-144)||(30398962-30399061)
[»] chr3 (3 HSPs)
chr3 (174-298)||(21620955-21621079)
chr3 (174-298)||(21642625-21642749)
chr3 (79-144)||(21621145-21621210)


Alignment Details
Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 174 - 298
Target Start/End: Original strand, 2596010 - 2596134
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||||||||||||||||| || || ||||||||| |||  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  2596010 tcattatatggcagatgaagattattggagttgaagagccatggactcaactccttaaaattagttaccaaaatcttcggactagatttcatgattttgc 2596109  T
Q  274 tgacttggaaaattgtcaattgttg 298  Q
    ||||||| |||||||||||||||||    
T  2596110 tgacttgaaaaattgtcaattgttg 2596134  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 174 - 298
Target Start/End: Original strand, 2588935 - 2589059
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||| ||||||||||||| || || ||||||||| |||  ||||||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||     
T  2588935 tcattgtatggcagatgaagatcattggagttgaagagccatggactcaactccttaaaattagctaccaaaatcttcgaactagatttcatgattttga 2589034  T
Q  274 tgacttggaaaattgtcaattgttg 298  Q
    |||||||||||||||||||||||||    
T  2589035 tgacttggaaaattgtcaattgttg 2589059  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 2576888 - 2577009
Alignment:
Q  177 ttatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgctga 276  Q
    |||||||||||||||| || || ||||||||| |||  ||||||||||| ||||||||||||||||||||||||| ||| | || |||||||||||||||    
T  2576888 ttatatggcagatgaagatcattggagttgaagagccatggactcaactccttaaaattagttaccaaaatcttcagacaagatatcatgattttgctga 2576987  T
Q  277 cttggaaaattgtcaattgttg 298  Q
    |||| |||||| ||| ||||||    
T  2576988 cttgaaaaattttcagttgttg 2577009  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 2581324 - 2581445
Alignment:
Q  177 ttatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgctga 276  Q
    |||||||||||||||| || || ||||||||  ||   ||||||||||| ||||||||||||||||||| |||||| |||| || ||||| ||||| |||    
T  2581324 ttatatggcagatgaagatcattggagttgacgagtcatggactcaactccttaaaattagttaccaaattcttcgaactagatatcatgcttttgatga 2581423  T
Q  277 cttggaaaattgtcaattgttg 298  Q
    ||||||||||||||||||||||    
T  2581424 cttggaaaattgtcaattgttg 2581445  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 2595845 - 2595944
Alignment:
Q  45 ttaaggcaaaggaattcgtcattgtttcgcttgatatggaaacggagttatacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    ||||||| |||||||| ||||||||||| ||| |||||| ||||||||  |||| ||||||| ||||||||  || ||||||||||||||||||| ||||    
T  2595845 ttaaggctaaggaatttgtcattgtttcactttatatgggaacggagtcgtacacgcagttgatgcctccctctggttttgatgaaatgtcatctattaa 2595944  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 2576728 - 2576819
Alignment:
Q  53 aaggaattcgtcattgtttcgcttgatatggaaacggagttatacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    |||||||| ||||||||||| |||||||||| |||  |||   |||  |||||| ||||||||  || ||||||||||| ||||||||||||    
T  2576728 aaggaatttgtcattgtttcacttgatatgggaacaaagtcgcacacacagttgatgcctccctctggttttgatgaaacgtcatctgttaa 2576819  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 2581205 - 2581255
Alignment:
Q  94 atacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    ||||| ||||||| |||||||  ||| ||||||||||||||||||||||||    
T  2581205 atacacgcagttgatgcctccatgtggttttgatgaaatgtcatctgttaa 2581255  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 2588819 - 2588869
Alignment:
Q  94 atacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    ||||| ||||||| |||||||| ||| ||||||||||||||||| ||||||    
T  2588819 atacacgcagttgatgcctccctgtggttttgatgaaatgtcatatgttaa 2588869  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 174 - 296
Target Start/End: Original strand, 46769374 - 46769496
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||||| ||||||||||||||| | ||||||||| |||  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  46769374 tcattatgtggcagatgaaaatattcggagttgaagagccttggactcaacttcttaaaattagttaccaaaatcttcggactagatttcatgattttgc 46769473  T
Q  274 tgacttggaaaattgtcaattgt 296  Q
    |||||||||| ||||||| ||||    
T  46769474 tgacttggaatattgtcagttgt 46769496  T

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Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 174 - 298
Target Start/End: Original strand, 29157051 - 29157175
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||||||||||||||| ||| | | ||||||||| |||  ||||||||||| ||||||||||||||||||| |||||| |||| |||||||||||||||    
T  29157051 tcattatatggcagatggaaacatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgc 29157150  T
Q  274 tgacttggaaaattgtcaattgttg 298  Q
    ||||||| |||||||||||||||||    
T  29157151 tgacttgaaaaattgtcaattgttg 29157175  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 29156889 - 29156985
Alignment:
Q  48 aggcaaaggaattcgtcattgtttcgcttgatatggaaacggagttatacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    |||| |||||||| ||||||||||| |||||| ||||||| |||| |||||  |||||| || ||||| ||||||||||||||||||||||| ||||    
T  29156889 aggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgtctccctgtgcttttgatgaaatgtcatctattaa 29156985  T

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Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 174 - 298
Target Start/End: Original strand, 30399126 - 30399250
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||||||||| ||||||||| | |  |||||||| ||| |||||||||||| ||||||||||| | ||||||||||||||||| || ||||||||||||    
T  30399126 tcattatatggaagatgaaaacatttagagttgaagagccgtggactcaactccttaaaattagctgccaaaatcttcggactagatatcatgattttgc 30399225  T
Q  274 tgacttggaaaattgtcaattgttg 298  Q
    |||||||||||||||||||||||||    
T  30399226 tgacttggaaaattgtcaattgttg 30399250  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 45 - 144
Target Start/End: Original strand, 30398962 - 30399061
Alignment:
Q  45 ttaaggcaaaggaattcgtcattgtttcgcttgatatggaaacggagttatacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    ||||||| |||||||| ||||||||||| |||||||||| ||| ||||| |||| |||  || ||||||||  || ||||||||||||||||||| ||||    
T  30398962 ttaaggctaaggaatttgtcattgtttcacttgatatgggaacagagttgtacatgcaaatgatgcctccctctggttttgatgaaatgtcatctattaa 30399061  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 21621079 - 21620955
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||||||||| ||||||||| | | ||||||||| ||  ||||||| |||| ||||||||||| ||||||||||||||||||| || ||||||||||||    
T  21621079 tcattatatggaagatgaaaacatttggagttgaagaggcgtggacttaactccttaaaattagctaccaaaatcttcggactagatatcatgattttgc 21620980  T
Q  274 tgacttggaaaattgtcaattgttg 298  Q
    |||||||||||| ||||||||||||    
T  21620979 tgacttggaaaaatgtcaattgttg 21620955  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 21642749 - 21642625
Alignment:
Q  174 tcattatatggcagatgaaaataatgggagttgaacagctgtggactcaactacttaaaattagttaccaaaatcttcggactaaatttcatgattttgc 273  Q
    ||||||||||| ||||||||| | | |||||| || ||| ||||||| |||| ||||||||||| ||||||||||||||||||| || ||||||||||||    
T  21642749 tcattatatggaagatgaaaacatttggagttaaagagccgtggacttaactccttaaaattagctaccaaaatcttcggactagatatcatgattttgc 21642650  T
Q  274 tgacttggaaaattgtcaattgttg 298  Q
    |||||||||||| ||||||||||||    
T  21642649 tgacttggaaaaatgtcaattgttg 21642625  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 21621210 - 21621145
Alignment:
Q  79 tatggaaacggagttatacaagcagttgttgcctcccggtgcttttgatgaaatgtcatctgttaa 144  Q
    ||||| ||| ||||| |||| ||||||| ||||||||  || ||||||||||||||||||| ||||    
T  21621210 tatgggaacagagttgtacacgcagttgatgcctccctctggttttgatgaaatgtcatctattaa 21621145  T

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