View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_1 (Length: 574)
Name: NF6239_low_1
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 7 - 548
Target Start/End: Original strand, 3705988 - 3706529
Alignment:
| Q |
7 |
acatcatcaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcggtataannnnnnnaaacaaagctacattcctttgtagca |
106 |
Q |
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| T |
3705988 |
acatcaacaggattggaaacaattagaagaacacaatgaggagagtaacgaaccaaaggcggtataatttttttaaacaaagctacattcctttgtagca |
3706087 |
T |
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| Q |
107 |
aattcaatctggactcgccattaatctggcgagccccagcagtgacgatgcagaggtcagaccccatcgtcactgaatagtcagtggaggcctggatctt |
206 |
Q |
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| T |
3706088 |
aattcaatctggactcgccattaatctgacgagccccagcagtgacgatgcagaggtcggaacccatcgtcactgaatagtcagtggaggcctggatctt |
3706187 |
T |
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| Q |
207 |
agtacgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtct |
306 |
Q |
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| T |
3706188 |
agtgcgggggaggaaggccgcagcatgttgtagatccagcatctcacctcgtagtttgtcaggaatggcgtcaacaagaacaagctcgtcgactaggtct |
3706287 |
T |
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| Q |
307 |
tgtgttgggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaaggaggtgaggcatgtt |
406 |
Q |
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| T |
3706288 |
tgtgttaggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtggcgtttggttggagaaggaggtgaggcatgtt |
3706387 |
T |
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| Q |
407 |
ggatggacttgaagaaggattgagttaggtccaaaccacctggtcccaatgatgaacctgatatgcttttgtgcatttggatttgcttgtgctgatttga |
506 |
Q |
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| T |
3706388 |
ggatggacttgaagaaggattgagttaggtccaaaccatctggtcccaatgatgaacctgatatgcttttgtgcattttgatttgcttgtgctgatttga |
3706487 |
T |
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| Q |
507 |
gtaaaggtaaatgcgaagtgtgtgatgggaaaatttgatttg |
548 |
Q |
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| T |
3706488 |
gtaaaggtaaatgtgaagtgtgtgatgggaaaatttgatttg |
3706529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 374
Target Start/End: Complemental strand, 41765310 - 41765147
Alignment:
| Q |
211 |
cgggggaggaaggccgcagcatgttgtagatctagcatctcacctcgtagtttgtcaggaatggtgtcaacaagaacaagctcgtcgactaggtcttgtg |
310 |
Q |
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| T |
41765310 |
cgggggaggaaagcagcagcgtgttgaagatcaagcatttcgccgcggagtttgtcgggtttgttgtcgacgatgacgagctcgtctgtgaggtcttgag |
41765211 |
T |
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| Q |
311 |
ttgggatggtttgagctatagccattcccacgttgcctgcgccgataactgagatcttgttgtg |
374 |
Q |
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| T |
41765210 |
ttaggatggtctgagcaatggccatgccgacgttgccggcgccgatgacggagatcttgttgtg |
41765147 |
T |
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