View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6239_low_12 (Length: 280)

Name: NF6239_low_12
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6239_low_12
NF6239_low_12
[»] chr3 (11 HSPs)
chr3 (97-264)||(8109385-8109553)
chr3 (97-258)||(4244090-4244253)
chr3 (198-275)||(19264262-19264338)
chr3 (193-274)||(4507782-4507863)
chr3 (95-263)||(24112281-24112449)
chr3 (193-275)||(31779283-31779364)
chr3 (179-275)||(4252627-4252723)
chr3 (191-221)||(4514392-4514422)
chr3 (193-226)||(19307307-19307340)
chr3 (193-229)||(12759107-12759143)
chr3 (128-168)||(17034755-17034795)
[»] chr5 (14 HSPs)
chr5 (81-275)||(12860064-12860260)
chr5 (154-275)||(19642338-19642459)
chr5 (193-270)||(36740703-36740780)
chr5 (193-275)||(19903197-19903279)
chr5 (202-271)||(22185618-22185687)
chr5 (198-275)||(20689763-20689840)
chr5 (199-271)||(17241270-17241341)
chr5 (127-245)||(25936513-25936630)
chr5 (181-257)||(31218224-31218299)
chr5 (193-274)||(18325805-18325887)
chr5 (128-175)||(17338370-17338417)
chr5 (186-260)||(37389912-37389986)
chr5 (127-172)||(19692245-19692290)
chr5 (193-226)||(22820979-22821012)
[»] chr6 (11 HSPs)
chr6 (128-272)||(6561279-6561424)
chr6 (179-260)||(15586259-15586339)
chr6 (132-226)||(29031694-29031789)
chr6 (202-272)||(30701764-30701834)
chr6 (95-226)||(19741480-19741614)
chr6 (226-275)||(11130513-11130562)
chr6 (211-264)||(21946535-21946588)
chr6 (128-217)||(17291273-17291362)
chr6 (198-269)||(23601340-23601409)
chr6 (193-226)||(4098130-4098163)
chr6 (128-168)||(21737296-21737336)
[»] chr7 (13 HSPs)
chr7 (91-272)||(8259036-8259219)
chr7 (128-226)||(4031765-4031863)
chr7 (81-228)||(5264955-5265103)
chr7 (130-275)||(11609419-11609563)
chr7 (179-275)||(28980871-28980967)
chr7 (198-275)||(5075752-5075829)
chr7 (128-220)||(12733384-12733476)
chr7 (205-261)||(23800010-23800065)
chr7 (179-263)||(20094723-20094809)
chr7 (128-166)||(10647080-10647118)
chr7 (193-226)||(19141957-19141990)
chr7 (193-226)||(20741356-20741389)
chr7 (198-258)||(23799622-23799681)
[»] chr8 (16 HSPs)
chr8 (94-273)||(29771962-29772143)
chr8 (80-229)||(18564878-18565029)
chr8 (93-229)||(19007905-19008043)
chr8 (200-275)||(18528383-18528458)
chr8 (194-275)||(10649820-10649902)
chr8 (93-264)||(28801084-28801256)
chr8 (141-220)||(26576384-26576462)
chr8 (156-261)||(33925842-33925948)
chr8 (181-273)||(29757902-29757994)
chr8 (199-274)||(29231483-29231557)
chr8 (128-259)||(20084923-20085056)
chr8 (193-273)||(17872743-17872823)
chr8 (193-261)||(6589767-6589834)
chr8 (213-275)||(34062720-34062782)
chr8 (193-275)||(12012731-12012812)
chr8 (93-149)||(7321685-7321742)
[»] chr1 (18 HSPs)
chr1 (93-264)||(17088886-17089059)
chr1 (178-275)||(31587279-31587379)
chr1 (80-264)||(21721369-21721555)
chr1 (180-274)||(16534027-16534121)
chr1 (186-275)||(15440367-15440455)
chr1 (198-275)||(14969044-14969120)
chr1 (188-275)||(11104977-11105064)
chr1 (186-264)||(43283001-43283078)
chr1 (187-275)||(20758499-20758587)
chr1 (184-275)||(30497592-30497682)
chr1 (198-267)||(9558622-9558690)
chr1 (97-175)||(31584588-31584668)
chr1 (79-150)||(14580905-14580979)
chr1 (230-275)||(19965704-19965750)
chr1 (96-211)||(19965531-19965648)
chr1 (198-264)||(23486221-23486285)
chr1 (184-274)||(35895734-35895821)
chr1 (182-230)||(12397510-12397557)
[»] scaffold0040 (1 HSPs)
scaffold0040 (94-275)||(8091-8272)
[»] chr2 (11 HSPs)
chr2 (128-275)||(22268346-22268494)
chr2 (154-263)||(27760722-27760830)
chr2 (198-275)||(26704205-26704281)
chr2 (74-168)||(19878307-19878403)
chr2 (180-274)||(13112756-13112850)
chr2 (198-263)||(24109859-24109923)
chr2 (130-215)||(42256004-42256087)
chr2 (128-175)||(13073441-13073488)
chr2 (198-249)||(24109670-24109720)
chr2 (233-275)||(33013961-33014004)
chr2 (193-221)||(16587449-16587477)
[»] scaffold0329 (1 HSPs)
scaffold0329 (96-275)||(3971-4153)
[»] chr4 (16 HSPs)
chr4 (193-269)||(12235881-12235957)
chr4 (196-271)||(13977677-13977752)
chr4 (198-275)||(20243601-20243678)
chr4 (128-221)||(4746549-4746644)
chr4 (193-275)||(15521944-15522026)
chr4 (198-267)||(46342571-46342640)
chr4 (179-261)||(12190794-12190874)
chr4 (226-275)||(11861845-11861894)
chr4 (200-275)||(15736323-15736398)
chr4 (235-275)||(19325403-19325443)
chr4 (198-275)||(8860245-8860321)
chr4 (231-275)||(12790959-12791003)
chr4 (243-275)||(46979148-46979180)
chr4 (199-275)||(17133474-17133549)
chr4 (128-168)||(16405172-16405212)
chr4 (182-226)||(26621175-26621218)
[»] scaffold0010 (1 HSPs)
scaffold0010 (198-273)||(135737-135811)
[»] scaffold1190 (1 HSPs)
scaffold1190 (193-275)||(901-983)
[»] scaffold0804 (1 HSPs)
scaffold0804 (79-150)||(622-696)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 8109553 - 8109385
Alignment:
Q  97 tactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaagtcttaagattat-actctgttttgtaat 194  Q
    ||||||||||||||||||| |||| ||||| | |||||| ||||||||||||||| | || ||||||||||||||||||| | | | |||| ||||||||    
T  8109553 tactctgtcaaatttaaaagtgcataaacagttaagaatctcttactaagttcatatcttggaaattctaagtcttaagagtcttattctgctttgtaat 8109454  T
Q  195 tgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
    || |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||    
T  8109453 tgattacacctctgattctatatcaagtgtaaaa-ccaaacaatcttttatttgattaatttagattgta 8109385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 258
Target Start/End: Complemental strand, 4244253 - 4244090
Alignment:
Q  97 tactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaa-gtcttaagattat-actctgttttgtaa 193  Q
    ||||||| |||||| ||||  ||| ||||||| ||||||||||||| |||||  | | ||||||||| ||| ||||||| | | | ||||| ||||||||    
T  4244253 tactctgccaaattcaaaagcgcataaacacttaagaatttcttacgaagtttttatcttagaaattataaagtcttaaaagtcttactctattttgtaa 4244154  T
Q  194 ttgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttag 258  Q
    |||||||||||||||||||||||||||| ||||||| |||||||  |||||||||||||||||||    
T  4244153 ttgtttacacctctgattgtatatcaagtgtaaaaa-caaacaacattttatttgattaagttag 4244090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 19264338 - 19264262
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  19264338 ttacacctctgattgtatattaagtgtaaaatc-aaacaatcttttatttgattaagttagattgtagaagtctcttt 19264262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 4507863 - 4507782
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctctt 274  Q
    |||| ||||||||||||||||| |||||| |||||   || | ||||||||||||||||||||| |||||||||||||||||    
T  4507863 attgcttacacctctgattgtacatcaagtgtaaatcacataaaatcttttatttgattaagttcgattgtagaagtctctt 4507782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 24112449 - 24112281
Alignment:
Q  95 cttactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaa-gtcttaagattat-actctgttttgt 191  Q
    |||||||||||||||| ||||   || ||||||| ||||||||||||| | |||||| | |||||||||| || ||||||||| | | ||| ||| |||     
T  24112449 cttactctgtcaaattcaaaaaa-cacaaacacttaagaatttcttaccaggttcatatcttagaaattccaaagtcttaagagtctgactttgtattgc 24112351  T
Q  192 aattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt 263  Q
    ||||  |||||||||| |||||||||| || |||||  |||||||| ||||||||||||| |||||||||||    
T  24112350 aatttcttacacctctaattgtatatctagtgtaaa--ccaaacaaacttttatttgattgagttagattgt 24112281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 31779364 - 31779283
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||| |||||||| ||||||||||||||| |||||| ||||  ||| |||||||| |||||||||||||| ||||||||||||    
T  31779364 attgattacacctttgattgtatatcaagtgtaaaacccaat-aatattttatttaattaagttagattgcagaagtctcttt 31779283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 4252723 - 4252627
Alignment:
Q  179 tactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||| |||| ||||||||||||||| | |||||| | |||  |||||||| |||||||||||||||| ||||||||||||| | ||||||||||||    
T  4252723 tactctattttttaattgtttacacctataattgtaaaacaaatgtaaaaac-aaacaatcttttatttcattaagttagattatgagaagtctcttt 4252627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 4514422 - 4514392
Alignment:
Q  191 taattgtttacacctctgattgtatatcaag 221  Q
    |||||||||||||||||||||||||||||||    
T  4514422 taattgtttacacctctgattgtatatcaag 4514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 19307307 - 19307340
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||||||||||||| ||||    
T  19307307 attgtttacacctctgattgtatatcaagtgtaa 19307340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 12759143 - 12759107
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaa 229  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  12759143 attgtttacacctctaattgtatatcaagtgtaaaaa 12759107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 17034755 - 17034795
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagt 168  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  17034755 taagaatttcttactaagttcatatcttagaaaatctaagt 17034795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 9e-39; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 81 - 275
Target Start/End: Original strand, 12860064 - 12860260
Alignment:
Q  81 attttaattgttcccttactctgtcaaatttaaaattgcaa-aaacact-aagaatttcttactaagttcatgttttagaaattctaagtcttaagatta 178  Q
    ||||||||||| |||||||||||||||||| ||||  |||  ||||||| |||||||||||||||||||||| | ||| ||||||||| | |||||| |     
T  12860064 attttaattgtacccttactctgtcaaattcaaaagcgcattaaacacttaagaatttcttactaagttcatatcttataaattctaattattaagagtc 12860163  T
Q  179 tactctgttttgtaattgtttacacc-tctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||| |||||||||||| ||||| || | ||||| |||||||||  ||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  12860164 tactatgttttgtaattatttaccccatgtgattttatatcaagtataaaatc-aaacagtcttttatttgattaagttagattgtagaagtctcttt 12860260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 154 - 275
Target Start/End: Original strand, 19642338 - 19642459
Alignment:
Q  154 ttagaaattctaagtcttaagattat-actctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgatta 252  Q
    ||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||| |||||||| |||||| |||||| | ||| |||||||||||||||||    
T  19642338 ttagaaattataagtcttaagagtatgactctattttgtaattgattacacctttgattgtaaatcaagtgtaaaatc-aaataatcttttatttgatta 19642436  T
Q  253 agttagattgtagaagtctcttt 275  Q
    |||||||||||||||||||||||    
T  19642437 agttagattgtagaagtctcttt 19642459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 193 - 270
Target Start/End: Original strand, 36740703 - 36740780
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtc 270  Q
    ||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  36740703 attgtttacacttttgattgtatatcaagtgtaaaacccaaacaatcttttatttgactaagttagattgtagaagtc 36740780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 19903279 - 19903197
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||| |||| |||||||| ||||||||||  ||||| ||||| |||||||||||||||||||||| |||||||||||||||||    
T  19903279 attgattactcctctgatcgtatatcaagtataaaacccaaataatcttttatttgattaagttaaattgtagaagtctcttt 19903197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 271
Target Start/End: Complemental strand, 22185687 - 22185618
Alignment:
Q  202 acctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtct 271  Q
    |||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||| |||| ||||    
T  22185687 acctctgattgtatatcaagtgtaaaaatctaacaatcttttatttgattaagttagattatagatgtct 22185618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 20689840 - 20689763
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||||| ||||||||||||||| |||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  20689840 ttacacctatgattgtatatcaagtgtaaaatc-aaacaatcttttatttgattaagtttgattgtgagaagtctcttt 20689763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 17241341 - 17241270
Alignment:
Q  199 tacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtct 271  Q
    ||||||| |||||| |||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  17241341 tacacctttgattgaatataaagtgtaaaaaccaa-caatcttttattcgattaagttagattgtagaagtct 17241270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 127 - 245
Target Start/End: Original strand, 25936513 - 25936630
Alignment:
Q  127 ctaagaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctg-ttttgtaattgtttacacctctgattgtatatcaagggta 225  Q
    |||||||||||||| ||||||||| | ||||||||||  |||||||||| | |  | |  ||||||||||| |||||||||||||||||||||||| |||    
T  25936513 ctaagaatttcttattaagttcatatcttagaaattccgagtcttaagagtgttatttcattttgtaattgcttacacctctgattgtatatcaagtgta 25936612  T
Q  226 aaaaccaaacaatcttttat 245  Q
    ||||  ||||| ||||||||    
T  25936613 aaaa--aaacattcttttat 25936630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 31218299 - 31218224
Alignment:
Q  181 ctctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagtta 257  Q
    |||| ||||||| |||||||||||| ||||||||||||||| || ||||||||| ||||||||||||||||| ||||    
T  31218299 ctctattttgtatttgtttacacctttgattgtatatcaagtgt-aaaaccaaagaatcttttatttgattatgtta 31218224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 18325805 - 18325887
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatctttta-tttgattaagttagattgtagaagtctctt 274  Q
    |||| |||||||||||||||||||||||| ||||||  ||||| |  ||||| ||||||||||||||||||| ||||| ||||    
T  18325805 attgattacacctctgattgtatatcaagtgtaaaactcaaacgactttttattttgattaagttagattgtggaagtatctt 18325887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 17338370 - 17338417
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaaga 175  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||||    
T  17338370 taagaatttcttactaagttcatatcttagaaattctaactcttaaga 17338417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 37389986 - 37389912
Alignment:
Q  186 ttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagat 260  Q
    ||||||||||| ||||||| || |||||| || ||| |  ||||  ||||||| |||||||||||||||||||||    
T  37389986 ttttgtaattgattacaccacttattgtaaattaagtgggaaaagaaaacaatattttatttgattaagttagat 37389912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 19692290 - 19692245
Alignment:
Q  127 ctaagaatttcttactaagttcatgttttagaaattctaagtctta 172  Q
    ||||||||||||||||||||| || | |||||| ||||||||||||    
T  19692290 ctaagaatttcttactaagtttatatcttagaagttctaagtctta 19692245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 22821012 - 22820979
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||||||||||||| ||||    
T  22821012 attgtttacacctctgattgtatatcaagtgtaa 22820979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 272
Target Start/End: Original strand, 6561279 - 6561424
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaagattat-actctgttttgtaattgtttacacctctgattgtatatcaagggtaa 226  Q
    |||||||||||| ||||||| || | |||||||||||||||||||||| | | ||||||||||||| || ||||||| ||||||||||||||||| ||||    
T  6561279 taagaatttcttgctaagtttatatgttagaaattctaagtcttaagagtcttactctgttttgtatttatttacacttctgattgtatatcaagtgtaa 6561378  T
Q  227 aaaccaaacaatcttttatttgattaagttagattgt-agaagtctc 272  Q
    || | |||||||||||||||||||||||||||||||| |||||||||    
T  6561379 aatc-aaacaatcttttatttgattaagttagattgtaagaagtctc 6561424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 15586339 - 15586259
Alignment:
Q  179 tactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagat 260  Q
    |||||||||||||| |||||||||||| ||||||||||||||| || |||| ||||||| ||||||||||||||||||||||    
T  15586339 tactctgttttgtatttgtttacacctttgattgtatatcaagtgt-aaaatcaaacaaccttttatttgattaagttagat 15586259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 29031789 - 29031694
Alignment:
Q  132 aatttcttactaagttcatgttttagaaattctaa-gtcttaagattatactctgttttgtaattgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||| | ||||||||||||| ||||||| | | |  | |||||||||||||||||||||||||||||||||||||| ||||    
T  29031789 aatttcttactaagttcatatcttagaaattctaaagtcttaaaagtttgttttgttttgtaattgtttacacctctgattgtatatcaagtgtaa 29031694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 272
Target Start/End: Original strand, 30701764 - 30701834
Alignment:
Q  202 acctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctc 272  Q
    |||||||||||||||||||| ||||||| |||||| |||||||| | ||||||||||||||||||||||||    
T  30701764 acctctgattgtatatcaagtgtaaaaatcaaacagtcttttatctaattaagttagattgtagaagtctc 30701834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 95 - 226
Target Start/End: Complemental strand, 19741614 - 19741480
Alignment:
Q  95 cttactctgtcaaatttaaaattgcaaa-aacact-aagaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctgttttgta 192  Q
    |||||||||||||||||||||  ||| | |||||| |||||||| |||||||||| |  |  ||||||||||||||||| ||| | |  |||||||||||    
T  19741614 cttactctgtcaaatttaaaagcgcatagaacacttaagaattttttactaagttaaaatcctagaaattctaagtctttagagtttgttctgttttgta 19741515  T
Q  193 attgtttacacctct-gattgtatatcaagggtaa 226  Q
    ||||||||||| ||| |||||||||||||| ||||    
T  19741514 attgtttacacatctcgattgtatatcaagtgtaa 19741480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 11130562 - 11130513
Alignment:
Q  226 aaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11130562 aaaaccaaacaatcttttatttgattaagttagcttgtagacgtctcttt 11130513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 21946535 - 21946588
Alignment:
Q  211 tgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
    ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||    
T  21946535 tgtatattaagtgtaaaactcaaacaatcttttatttgattaagttagattgta 21946588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 17291362 - 17291273
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctgttttgtaattgtttacacctctgattgtatat 217  Q
    ||||||||||||||||||||||| | |||||||||||| ||||| | | | || ||| |  |||||||| |||||||| |||||| ||||    
T  17291362 taagaatttcttactaagttcatatcttagaaattctacgtctttatagtctattctttcatgtaattggttacacctatgattgcatat 17291273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 23601340 - 23601409
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagt 269  Q
    |||||||||||| ||||||| ||| |||| ||||||  ||||||||||||||||||||||| || |||||||    
T  23601340 ttacacctctgagtgtatat-aagtgtaagaaccaat-aatcttttatttgattaagttagcttctagaagt 23601409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 4098130 - 4098163
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||||||||||||| ||||    
T  4098130 attgtttacacctctgattgtatatcaagagtaa 4098163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 21737336 - 21737296
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagt 168  Q
    ||||||||||||||||||||||  | |||||||||||||||    
T  21737336 taagaatttcttactaagttcacatcttagaaattctaagt 21737296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 8e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 91 - 272
Target Start/End: Complemental strand, 8259219 - 8259036
Alignment:
Q  91 ttcccttactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaagtcttaagattata-ctctgttt 188  Q
    |||| |||||||||||||||| | |   || ||||||| || ||||||||||||||||||| | ||||||||| |||||||||||| | |  |||| |||    
T  8259219 ttccattactctgtcaaattttatagcacataaacacttaataatttcttactaagttcatttcttagaaattttaagtcttaagagtcttgctctattt 8259120  T
Q  189 tgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctc 272  Q
    || | ||||| |||||||| || ||||||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8259119 tgcatttgttcacacctctaatcgtatatctagtgaaaaaatcaaacaatcttttatttgattaagttagattgtagaagtctc 8259036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 226
Target Start/End: Original strand, 4031765 - 4031863
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctgttttgtaattgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||||||| | ||| |||||||||||||| | | |||| ||| |||||||||||||||||||||| ||||||||||||| ||||    
T  4031765 taagaatttcttactaagttcatatcttacaaattctaagtctttaaagtatattctattttgtaattgtttacacctctaattgtatatcaagtgtaa 4031863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 228
Target Start/End: Complemental strand, 5265103 - 5264955
Alignment:
Q  81 attttaattgttcccttactctgtcaaatttaaaattgcaaa-aacac-taagaatttcttactaagttcatgttttagaaattctaagtcttaagatta 178  Q
    |||||||||||||||||||  ||||||||| |||| |||||| ||||| ||||||||||||||||| ||||| | |||||||||  ||||  | ||| |     
T  5265103 attttaattgttcccttacattgtcaaattcaaaagtgcaaagaacacttaagaatttcttactaa-ttcatatcttagaaatttcaagttcttagagtt 5265005  T
Q  179 tactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaa 228  Q
    |  |||||||||||||||||||||||| |||||  |||||||| ||||||    
T  5265004 tgttctgttttgtaattgtttacacctttgattaaatatcaagtgtaaaa 5264955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 275
Target Start/End: Original strand, 11609419 - 11609563
Alignment:
Q  130 agaatttcttactaagttcatgttttagaaattct-aagtcttaagattatactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaa 228  Q
    |||||||||||| || || || | ||| ||||||| ||||||||| | | |||||| ||| ||| ||||||||| || ||||||||||||||| || |||    
T  11609419 agaatttcttacaaactttatatcttataaattcttaagtcttaa-agtctactctatttcgtatttgtttacatctttgattgtatatcaagcgt-aaa 11609516  T
Q  229 accaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||||    
T  11609517 accaaacaatctttta-ttgattaagttagattgtgacaagtctcttt 11609563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 275
Target Start/End: Complemental strand, 28980967 - 28980871
Alignment:
Q  179 tactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||| |||||||||||||||||||| |||| |||||||| ||| || |||||||||| |||| ||||||||||||| |||| ||| ||||||||||||    
T  28980967 tactatgttttgtaattgtttacacatctggttgtatattaagtgt-aaaaccaaaccatctcttatttgattaagatagagtgtgagaagtctcttt 28980871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 5075752 - 5075829
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||||||||||||||| ||| | |||||| | ||||||||||||||||||| |||||||||||| ||||||||||||    
T  5075752 ttacacctctgattgtatttcaggtgtaaaatc-aaacaatcttttatttgatcaagttagattgtgagaagtctcttt 5075829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 12733476 - 12733384
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctgttttgtaattgtttacacctctgattgtatatcaa 220  Q
    ||||||||||||||||||||||| | ||||||||| |||||||| ||| | |  ||  || | ||||||||||||| ||||||||||||||||    
T  12733476 taagaatttcttactaagttcatatattagaaattataagtcttgagagtttgttcatttatctaattgtttacacatctgattgtatatcaa 12733384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 23800065 - 23800010
Alignment:
Q  205 tctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagatt 261  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  23800065 tctgattgtatatcaaatgtaaaa-ccaaacaatcttttatttgattaagttagatt 23800010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 263
Target Start/End: Complemental strand, 20094809 - 20094723
Alignment:
Q  179 tactctgttttgtaattgtttacacctctgattgtatatcaagggtaaa--aaccaaacaatcttttatttgattaagttagattgt 263  Q
    ||||||| |||||||||||||  |||| |||||||| |||||| |||||  ||  ||| || ||||||||| |||||||||||||||    
T  20094809 tactctgctttgtaattgtttctacctttgattgtaaatcaagtgtaaaataaaaaaaaaagcttttatttcattaagttagattgt 20094723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Original strand, 10647080 - 10647118
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaa 166  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  10647080 taagaatttcttactaagttcatatcttagaaattctaa 10647118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 19141990 - 19141957
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||||||||||||| ||||    
T  19141990 attgtttacacctctgattgtatatcaagtgtaa 19141957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 20741389 - 20741356
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||||||||||||||||||||| ||||    
T  20741389 attgtttacacctctgattgtatatcaagtgtaa 20741356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 23799681 - 23799622
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttag 258  Q
    |||||||| | ||||||||||||| || ||  ||||||||| |||||||||||||||||||    
T  23799681 ttacaccttttattgtatatcaagtgtgaac-ccaaacaatattttatttgattaagttag 23799622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 29771962 - 29772143
Alignment:
Q  94 ccttactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaagtcttaagattata-ctctgttttgt 191  Q
    ||||||||||||||||||||||  ||  ||||||| |||||| | ||||||||||||| | |||||||||||||||||| ||| | |  |||| ||||||    
T  29771962 ccttactctgtcaaatttaaaagcgcgtaaacacttaagaatgttttactaagttcatatcttagaaattctaagtctttagagtcttgctctattttgt 29772061  T
Q  192 aattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctct 273  Q
    ||||| ||||| ||||||  |||||||||| |||||| ||||| |||||||||||||||| ||||||||||| ||||||||||    
T  29772062 aattgattacatctctgacagtatatcaagtgtaaaa-ccaaataatcttttatttgattgagttagattgtaagaagtctct 29772143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 229
Target Start/End: Complemental strand, 18565029 - 18564878
Alignment:
Q  80 aattttaattgttcccttactctgtcaaatttaaaattgcaaaaac--actaagaatttcttactaagttcatgttttagaaattctaagtcttaagatt 177  Q
    ||||||||||||  ||||||||||||||||| ||||  ||| | ||  | ||||||||||||||||||||    | |||||||||||||||||| ||| |    
T  18565029 aattttaattgtctccttactctgtcaaattcaaaagcgcatagaccaattaagaatttcttactaagttatactcttagaaattctaagtctttagagt 18564930  T
Q  178 atactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaa 229  Q
     |  | |||||||||||||||||||||||||||||||||||||| |||||||    
T  18564929 ctgttatgttttgtaattgtttacacctctgattgtatatcaagtgtaaaaa 18564878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 19008043 - 19007905
Alignment:
Q  93 cccttactctgtcaaatttaaaattgcaaa-aacac-taagaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctgttttg 190  Q
    |||||||| ||||||||||||||  ||| | ||||| ||||||||||||||||||||||| | ||| |||||| |||||||   | | || ||| |||||    
T  19008043 cccttactatgtcaaatttaaaaccgcatagaacacataagaatttcttactaagttcatatcttataaattccaagtctttgaagtctattctattttg 19007944  T
Q  191 taattgtttacacctctgattgtatatcaagggtaaaaa 229  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  19007943 taattgtctacacctctgattgtatatcaagtgtaaaaa 19007905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 200 - 275
Target Start/End: Original strand, 18528383 - 18528458
Alignment:
Q  200 acacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||||||| |||||||||||||  |||||| |||||||||||||||||||||||||| | ||||||||||||||||    
T  18528383 acacctctcattgtatatcaagtataaaaatcaaacaatcttttatttgattaagttggtttgtagaagtctcttt 18528458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 10649820 - 10649902
Alignment:
Q  194 ttgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||||||| | ||||||||||||||| |||||||||||| ||| |||||||| ||||||||||||||| ||||||||||||    
T  10649820 ttgtttacacttttgattgtatatcaagtgtaaaaaccaaataatattttattttattaagttagattgtaagaagtctcttt 10649902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 264
Target Start/End: Original strand, 28801084 - 28801256
Alignment:
Q  93 cccttactctgtcaaatttaaaattgcaaaaacacta-agaatttcttactaagttcatgttttagaaattctaa-gtcttaagattat-actctgtttt 189  Q
    |||||||||||||||||| ||||  ||  ||| |||  |||||||||||| |||||||| | ||| ||||||||| ||||||||| | | ||| ||||||    
T  28801084 cccttactctgtcaaattcaaaagcgcgtaaatacttgagaatttcttaccaagttcatatcttataaattctaaagtcttaagaatcttactttgtttt 28801183  T
Q  190 gtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
    ||||||  ||||||| || ||||||||| ||| || |||||||||||||| ||||||||||||||||| ||||||    
T  28801184 gtaatttcttacacccctaattgtatatgaagtgt-aaaaccaaacaatc-tttatttgattaagttaaattgta 28801256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 220
Target Start/End: Complemental strand, 26576462 - 26576384
Alignment:
Q  141 ctaagttcatgttttagaaattctaagtcttaagattatactctgttttgtaattgtttacacctctgattgtatatcaa 220  Q
    |||||||||| | ||||||||||||| | |||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  26576462 ctaagttcatatcttagaaattctaaattttaagagtatgctctgttt-gtaattgtttacacctctgattgtatatcaa 26576384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 261
Target Start/End: Original strand, 33925842 - 33925948
Alignment:
Q  156 agaaattc-taagtcttaaga-ttatactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaa 253  Q
    |||||||| |||||||||||| || || ||||||||||| ||||||||  |||||||||||||| ||| |||||| | ||||||||||||||||||||||    
T  33925842 agaaattcgtaagtcttaagagttttaatctgttttgtatttgtttacctctctgattgtatattaagtgtaaaatc-aaacaatcttttatttgattaa 33925940  T
Q  254 gttagatt 261  Q
    ||| ||||    
T  33925941 gttggatt 33925948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 29757902 - 29757994
Alignment:
Q  181 ctctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctct 273  Q
    |||| ||||||||||| |||||||||| |||| |||||||| || ||||||||| ||| |||||| ||||||||||||||||| ||||||||||    
T  29757902 ctctattttgtaattgattacacctctaattgaatatcaagtgt-aaaaccaaataatattttatctgattaagttagattgtaagaagtctct 29757994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 274
Target Start/End: Complemental strand, 29231557 - 29231483
Alignment:
Q  199 tacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctctt 274  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||||||||||||||| || ||||| ||||||||||||    
T  29231557 tacacctctgattatatataaagtgtaaaa-ccaaacaatcttttatttgattaggtcagattttagaagtctctt 29231483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 20085056 - 20084923
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaa-gtcttaagattata-ctctgttttgtaatt-gtttacacctctgattgtatatcaagggt 224  Q
    |||||||||||||| ||||| || | ||||||||| ||| |||||| || | || || ||||||||| || ||| |||||| || |||||||||||| ||    
T  20085056 taagaatttcttaccaagtttatatcttagaaattataaagtcttaggagtctaactgtgttttgtattttgttcacacctttg-ttgtatatcaagtgt 20084958  T
Q  225 aaaaaccaaacaatcttttatttgattaagttaga 259  Q
    ||||| ||||||| |||||||||||||||||||||    
T  20084957 aaaaatcaaacaaccttttatttgattaagttaga 20084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 17872743 - 17872823
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctct 273  Q
    ||||||||||| |||||||||||| |||| |||||| | ||||||| |||||| ||||||| |||||| ||| ||||||||    
T  17872743 attgtttacacatctgattgtatagcaagagtaaaaccaaaacaatattttatatgattaaattagatggtataagtctct 17872823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 6589767 - 6589834
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagatt 261  Q
    |||| |||||||||||||||||||||||  ||||||  ||||| ||| |||||||||||||||||||||    
T  6589767 attgattacacctctgattgtatatcaaatgtaaaactcaaacgatc-tttatttgattaagttagatt 6589834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 275
Target Start/End: Original strand, 34062720 - 34062782
Alignment:
Q  213 tatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    ||||||||| |||||| | ||||||| ||||||||  ||||||||||| ||||||||||||||    
T  34062720 tatatcaagtgtaaaacctaaacaatattttatttagttaagttagatcgtagaagtctcttt 34062782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 12012731 - 12012812
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||| |||| ||||| |||||||||||   ||||||   ||||||||||| ||| |||||||||||||||||||| |||||||    
T  12012731 attgattacccctcttattgtatatcatatgtaaaacttaaacaatctttaatt-gattaagttagattgtagaaatctcttt 12012812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 7321685 - 7321742
Alignment:
Q  93 cccttactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttca 149  Q
    |||||||| ||||||||||  || |||| ||||||| |||||||||||||||||||||    
T  7321685 cccttactttgtcaaattttgaagtgcataaacacttaagaatttcttactaagttca 7321742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 264
Target Start/End: Original strand, 17088886 - 17089059
Alignment:
Q  93 cccttactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaa-gtcttaagattat-actctgtttt 189  Q
    |||||||||||||||||| |||| |||| ||||||| |||||||| |||| |||||||| | ||| ||||||||| ||||||| | | | ||||| ||||    
T  17088886 cccttactctgtcaaattcaaaagtgcataaacacttaagaatttattaccaagttcatatcttaaaaattctaaagtcttaatagtcttactctatttt 17088985  T
Q  190 gtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
    ||||||| |||||| |||||||||||||||| | | ||||||||| ||| |||||||||||||||||||||||||    
T  17088986 gtaattgcttacacatctgattgtatatcaa-gtttaaaaccaaaaaatattttatttgattaagttagattgta 17089059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 178 - 275
Target Start/End: Original strand, 31587279 - 31587379
Alignment:
Q  178 atactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatc---ttttatttgattaagttagattgtagaagtctctt 274  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||| ||||||| ||||    
T  31587279 atactctgatttgtaattgtttacacatctgattgtatatcaagtgtaaaaaccaaacaatctttttttatttgattaagttagattatagaagtttctt 31587378  T
Q  275 t 275  Q
    |    
T  31587379 t 31587379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 264
Target Start/End: Original strand, 21721369 - 21721555
Alignment:
Q  80 aattttaattgttcccttactctgtcaaatttaaaattgcaaaaacacta-agaatttcttactaagttcatgttttagaaattctaa-gtcttaagatt 177  Q
    ||||||| | || |||||||||| ||||||| ||||  ||| |||||||  | ||||| |||| |||||||| | ||| ||||||||| ||||||||| |    
T  21721369 aattttactagtgcccttactctatcaaattcaaaagcgcataaacactttataatttattaccaagttcatatcttaaaaattctaaagtcttaagagt 21721468  T
Q  178 at-actctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
     | ||||||||||| |||||||||||||||| ||||||||||||| || ||||||||| ||| | | |||||||||||||||||||||    
T  21721469 cttactctgttttgcaattgtttacacctctaattgtatatcaagtgt-aaaaccaaataatttgtcatttgattaagttagattgta 21721555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 16534121 - 16534027
Alignment:
Q  180 actctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctctt 274  Q
    ||||| ||||||| ||| |||||||||||||||||||||||| ||||||  |||| ||| |||||||||||||||||||||||||||||| ||||    
T  16534121 actctattttgtatttgattacacctctgattgtatatcaagtgtaaaacacaaataattttttatttgattaagttagattgtagaagtttctt 16534027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 186 - 275
Target Start/End: Complemental strand, 15440455 - 15440367
Alignment:
Q  186 ttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    ||||||| |||||||||||| ||||||||||||||| |||||| | ||||||| |||||||||||| ||||||||||||||| |||||||    
T  15440455 ttttgtatttgtttacacctatgattgtatatcaagtgtaaaa-ctaaacaattttttatttgatttagttagattgtagaattctcttt 15440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 14969044 - 14969120
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| ||| |||||    
T  14969044 ttacacctttgattgtatatcaagtgtgaaa-ccaaacaatcttttatttgattaagttagattgtagtagtatcttt 14969120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 11105064 - 11104977
Alignment:
Q  188 ttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    ||||| ||| |||||||| || |||||||| ||| |||||| ||||||||||||||||||||| ||||| |||||||||| |||||||    
T  11105064 ttgtatttgattacacctatgcttgtatattaagtgtaaaacccaaacaatcttttatttgataaagtttgattgtagaaatctcttt 11104977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 43283001 - 43283078
Alignment:
Q  186 ttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
    |||| |||||||||| || ||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||||    
T  43283001 ttttataattgtttatacatctgattgtatataaagtgtaaaa-ccaaacaatcttttatttgatcaagttagattgta 43283078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 275
Target Start/End: Complemental strand, 20758587 - 20758499
Alignment:
Q  187 tttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    ||||||||||||||||| ||||||||||||||||| || |||| |||||||| ||||||||||||| | || ||||| ||||||||||||    
T  20758587 tttgtaattgtttacacgtctgattgtatatcaagtgt-aaaatcaaacaattttttatttgattacgatatattgtgagaagtctcttt 20758499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 275
Target Start/End: Complemental strand, 30497682 - 30497592
Alignment:
Q  184 tgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    ||||||||||||||||||| ||| ||||||||| |||| |||||  ||||| | |||||||||||||||||||||||||| |||| |||||||    
T  30497682 tgttttgtaattgtttacatctccgattgtataacaagtgtaaa--ccaaatattcttttatttgattaagttagattgtgagaattctcttt 30497592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 9558622 - 9558690
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaa 267  Q
    |||||||| ||| ||||||||||| |||||| | |||||||||||||||| ||| |||||||||||||||    
T  9558622 ttacacctttgaatgtatatcaagtgtaaaatc-aaacaatcttttatttaattcagttagattgtagaa 9558690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 175
Target Start/End: Original strand, 31584588 - 31584668
Alignment:
Q  97 tactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgt-tttagaaattctaagtcttaaga 175  Q
    |||||| ||||||| ||||  ||| ||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||    
T  31584588 tactctatcaaattcaaaagcgcataaacacttaagaatttattactaagttcatatctttagaaattctaagtcttaaga 31584668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 14580905 - 14580979
Alignment:
Q  79 caattttaattgttcccttactctgtcaaatttaaaattgc--aaaaacac-taagaatttcttactaagttcat 150  Q
    ||||||||||||| |||||||||||||||||| ||||  ||  |||||||| |||||||||||||| ||||||||    
T  14580905 caattttaattgtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttcttaccaagttcat 14580979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 19965704 - 19965750
Alignment:
Q  230 ccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  19965704 ccaaacaatcttttatttgattaagttagattgtgataagtctcttt 19965750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 19965531 - 19965648
Alignment:
Q  96 ttactctgtcaaatttaaaattgcaaaaacacta-agaatttcttactaagttcatgttttagaaattct-aagtcttaagattatactctgttttgtaa 193  Q
    |||||||| |||||| ||||  ||| |||||||  | ||||||||||||||||||| | ||||||||||| ||||||||   |  |||||||||||||||    
T  19965531 ttactctgccaaattgaaaagcgcataaacacttcataatttcttactaagttcatatcttagaaattctaaagtcttagagtcttactctgttttgtaa 19965630  T
Q  194 ttgtttacacctctgatt 211  Q
    | | | ||||||||||||    
T  19965631 tagctgacacctctgatt 19965648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 264
Target Start/End: Complemental strand, 23486285 - 23486221
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgta 264  Q
    |||||||||| ||||||||| ||| |||||   |||||||||||||||||||| |||||| ||||||    
T  23486285 ttacacctctaattgtatattaagtgtaaat--caaacaatcttttatttgataaagttatattgta 23486221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 274
Target Start/End: Complemental strand, 35895821 - 35895734
Alignment:
Q  184 tgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctctt 274  Q
    ||||||||| ||| |||||||| ||||||||| ||||| |||||    |||  || |||||||||||||| ||||||||||||||||||||    
T  35895821 tgttttgta-ttgcttacacctttgattgtatctcaagtgtaaatt--aaatgatattttatttgattaatttagattgtagaagtctctt 35895734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 12397557 - 12397510
Alignment:
Q  182 tctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaac 230  Q
    ||||||||||| |||||||||||| ||||||||||||||| ||| ||||    
T  12397557 tctgttttgta-ttgtttacacctttgattgtatatcaagtgtacaaac 12397510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 94 - 275
Target Start/End: Original strand, 8091 - 8272
Alignment:
Q  94 ccttactctgtcaaatttaaaattgcaaaaacactaagaatttcttactaagttcatgttttagaaattct-aagtcttaagattatactctgttttgta 192  Q
    ||||||||||||||| | ||||| |||   ||||| |||||||||||| || || || | ||||||||| | ||||||||||| |  | |||   |||||    
T  8091 ccttactctgtcaaaatcaaaat-gcatttacacttagaatttcttacaaactttatatcttagaaattatcaagtcttaagagtccattctaaattgta 8189  T
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
     |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||||||||    
T  8190 tttgtttacacctcttattgtatatcaagtgtaaaagccaaacaatcttttatttgattaggttagaatgtagaagtctcttt 8272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 275
Target Start/End: Complemental strand, 22268494 - 22268346
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaagatta-tactctgttttgtaattgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||| ||||||| ||||||||| | |||||||||| | |||| |||| |  |||||| |||||||||||||||||| ||||||  ||||| ||| ||||    
T  22268494 taagagtttcttattaagttcatatcttagaaattccacgtct-aagagtggtactctattttgtaattgtttacacatctgatcttatattaagtgtaa 22268396  T
Q  227 aaac-caaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  22268395 aaaatcaaacaatcttttatttgattaagttagattgtagaagtctcttt 22268346  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 263
Target Start/End: Original strand, 27760722 - 27760830
Alignment:
Q  154 ttagaaattct-aagtcttaagattatactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgatta 252  Q
    ||||||||||| |||||||| || | |||| |||||||||| ||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||    
T  27760722 ttagaaattcttaagtctta-gagtctactatgttttgtaaatgtttacacctcttattgtatatcaagtgt-aaaaccaaacaatcttttatatgatta 27760819  T
Q  253 agttagattgt 263  Q
     ||||||||||    
T  27760820 ggttagattgt 27760830  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 26704281 - 26704205
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||||| |||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  26704281 ttacacatctgattgtatatcaagtttaaaa-ccaaacaatattttatttgattaagttagattatagaagtctcttt 26704205  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 19878307 - 19878403
Alignment:
Q  74 ctctacaattttaattgttcccttactctgtcaaatttaaaattgca-aaaacac-taagaatttcttactaagttcatgttttagaaattctaagt 168  Q
    |||| ||||||||||||| |||||||||||||||||| ||||  ||| | ||||| ||||||||| ||||||||||||| | ||||| |||||||||    
T  19878307 ctctgcaattttaattgtgcccttactctgtcaaattcaaaagcgcatagaacacttaagaatttattactaagttcatatcttagatattctaagt 19878403  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 13112756 - 13112850
Alignment:
Q  180 actctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctctt 274  Q
    |||||||||| || ||| |||  ||||| |||||||||||||  ||||   ||||||||||||||||||||||||||  | ||||||||||||||    
T  13112756 actctgttttttatttgattatgcctctaattgtatatcaagtttaaatctcaaacaatcttttatttgattaagttgcactgtagaagtctctt 13112850  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 24109859 - 24109923
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt 263  Q
    |||||||||||||||||||||||| || ||||  ||||||| |||||| |||||||||||||||||    
T  24109859 ttacacctctgattgtatatcaagtgt-aaaattaaacaatattttatatgattaagttagattgt 24109923  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 42256087 - 42256004
Alignment:
Q  130 agaatttcttactaagttcatgttttagaaattctaagtcttaagattatactctgttttgtaattgtttacacctctgattgtat 215  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||| | |  |||| ||| ||||||||||||||||| |||||||    
T  42256087 agaatttcttactaagttcatattttagaaattctaagtcat-agagtctgttctgattt-taattgtttacacctctcattgtat 42256004  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 13073488 - 13073441
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagtcttaaga 175  Q
    |||||||||| |||||||||||| | ||| ||||||||||||||||||    
T  13073488 taagaatttcgtactaagttcatatcttaaaaattctaagtcttaaga 13073441  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 24109670 - 24109720
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttga 249  Q
    |||||||| ||||||||||||||| || |||||||||||| |||||||||||    
T  24109670 ttacacctttgattgtatatcaagtgt-aaaaccaaacaaacttttatttga 24109720  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 275
Target Start/End: Original strand, 33013961 - 33014004
Alignment:
Q  233 aacaatcttttatttgatt-aagttagattgtagaagtctcttt 275  Q
    |||||| |||||||||||| ||||||||||||||||||||||||    
T  33013961 aacaatgttttatttgatttaagttagattgtagaagtctcttt 33014004  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 16587449 - 16587477
Alignment:
Q  193 attgtttacacctctgattgtatatcaag 221  Q
    |||||||||||||||||||||||||||||    
T  16587449 attgtttacacctctgattgtatatcaag 16587477  T

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Target: scaffold0329 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 96 - 275
Target Start/End: Complemental strand, 4153 - 3971
Alignment:
Q  96 ttactctgtcaaatttaaaattgcaaaaacact-aagaatttcttactaagttcatgttttagaaattctaa-gtcttaagattat-actctgttttgta 192  Q
    |||||||  |||||| ||||  ||| ||||||| ||||||||||||| |||||||| | ||||||||||||| ||||| ||| | | ||||| ||| |||    
T  4153 ttactcttccaaattgaaaaacgcataaacacttaagaatttcttaccaagttcatatcttagaaattctaaagtctttagagtcttactctatttggta 4054  T
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
     ||||||||||||||||||||||||||||  | |||||||||||||  ||||||| || |||||||||||| ||||||||||||    
T  4053 cttgtttacacctctgattgtatatcaagtat-aaaaccaaacaattgtttatttaataaagttagattgtaagaagtctcttt 3971  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 269
Target Start/End: Complemental strand, 12235957 - 12235881
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagt 269  Q
    |||| |||||||||||||||||||||||| |||||   || ||||||||||||||||||||||||||||||||||||    
T  12235957 attgcttacacctctgattgtatatcaagtgtaaattacatacaatcttttatttgattaagttagattgtagaagt 12235881  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 13977677 - 13977752
Alignment:
Q  196 gtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtct 271  Q
    |||||||| |||||||| |||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  13977677 gtttacacttctgattgcatatcaagcgtaaaacccaaacaattttttatttgattaagttaaattgtagaagtct 13977752  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 20243678 - 20243601
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    |||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  20243678 ttacacatctaattgtatatcaagtgtaaaa-ccaaacaatcttttatttgattaagttagattgtaagaagtctcttt 20243601  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 4746549 - 4746644
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattcta-agtcttaa-gattatactctgttttgtaattgtttacacctctgattgtatatcaag 221  Q
    ||||||||||||||||||| ||| | |||||||||||| |||||||| || | |  |||||| ||||||||||||||||||||||| |||||||||    
T  4746549 taagaatttcttactaagtacatatcttagaaattctatagtcttaaagagtttgttctgttctgtaattgtttacacctctgattatatatcaag 4746644  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 275
Target Start/End: Original strand, 15521944 - 15522026
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||| ||| |||||||||| || |||||| ||||||   ||||||||||||||||||||||||||||||||| |||| |||||    
T  15521944 attgattaaacctctgattataaatcaagtgtaaaacttaaacaatcttttatttgattaagttagattgtaaaagtttcttt 15522026  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 46342640 - 46342571
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaa 267  Q
    |||||| ||||||||||||||||| |||||||   ||||||| ||||||||||||||||||||| |||||    
T  46342640 ttacacatctgattgtatatcaagtgtaaaaaatcaacaatcctttatttgattaagttagattttagaa 46342571  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 261
Target Start/End: Complemental strand, 12190874 - 12190794
Alignment:
Q  179 tactctgttttgtaattgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagatt 261  Q
    |||| |||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| |||||||||||||| ||||||    
T  12190874 tactttgttttgtaattgtttacacctttgattgtatataaagtgt-aaaactgaacaatc-tttatttgattaagctagatt 12190794  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 11861894 - 11861845
Alignment:
Q  226 aaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  11861894 aaaaccaaaccatcttttatctgattaaattagattgtagaagtctcttt 11861845  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 275
Target Start/End: Complemental strand, 15736398 - 15736323
Alignment:
Q  200 acacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgt-agaagtctcttt 275  Q
    ||||||||||||||| |||||| |||||| |||||||||  || |||||||||||||||| ||| ||||||||||||    
T  15736398 acacctctgattgtagatcaagtgtaaaa-ccaaacaattgttgatttgattaagttagaatgtgagaagtctcttt 15736323  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 19325403 - 19325443
Alignment:
Q  235 caatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  19325403 caatcttttatttgattaagttagattgtagaactctcttt 19325443  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 8860321 - 8860245
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    ||||| |||| ||||||||| ||| |||||| |||||||||||| ||||  ||||||||||||||| ||||| |||||    
T  8860321 ttacatctctaattgtatattaagagtaaaa-ccaaacaatcttctattatattaagttagattgttgaagtttcttt 8860245  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 12791003 - 12790959
Alignment:
Q  231 caaacaatcttttatttgattaagttagattgtagaagtctcttt 275  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||    
T  12791003 caaacaattttttatatgattaagttagattgtagaagtttcttt 12790959  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 46979180 - 46979148
Alignment:
Q  243 tatttgattaagttagattgtagaagtctcttt 275  Q
    |||||||||||||||||||||||||||||||||    
T  46979180 tatttgattaagttagattgtagaagtctcttt 46979148  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 275
Target Start/End: Complemental strand, 17133549 - 17133474
Alignment:
Q  199 tacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaag-ttagattgtagaagtctcttt 275  Q
    ||||||| ||||||||||||||  ||||||  |||   |||||||||||||||||  |||||||||||||||||||||    
T  17133549 tacacctgtgattgtatatcaattgtaaaatgcaat--atcttttatttgattaaacttagattgtagaagtctcttt 17133474  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 16405172 - 16405212
Alignment:
Q  128 taagaatttcttactaagttcatgttttagaaattctaagt 168  Q
    |||||||||||||||| |||||| | |||||||||||||||    
T  16405172 taagaatttcttactaggttcatatcttagaaattctaagt 16405212  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 26621175 - 26621218
Alignment:
Q  182 tctgttttgtaattgtttacacctctgattgtatatcaagggtaa 226  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||    
T  26621175 tctgttttgta-ttatttacacctctgattgtatatcaagtgtaa 26621218  T

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Target: scaffold0010 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 273
Target Start/End: Complemental strand, 135811 - 135737
Alignment:
Q  198 ttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagattgtagaagtctct 273  Q
    |||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||| |||||| ||||||||    
T  135811 ttacacctctgattgtatatcaagtgtaaaa-ctaaataatcttttatttgattaagttaaattgtaaaagtctct 135737  T

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Target: scaffold1190 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1190
Description:

Target: scaffold1190; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 983 - 901
Alignment:
Q  193 attgtttacacctctgattgtatatcaagggtaaaaaccaaacaatcttttatttgattaagttagatt-gtagaagtctcttt 275  Q
    |||| |||||||||||| ||||||||||  ||||||  ||||| ||| |||||||||||||||||||||  |||||||||||||    
T  983 attgattacacctctgaatgtatatcaaatgtaaaactcaaacgatc-tttatttgattaagttagattattagaagtctcttt 901  T

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Target: scaffold0804 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0804
Description:

Target: scaffold0804; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 622 - 696
Alignment:
Q  79 caattttaattgttcccttactctgtcaaatttaaaattgc--aaaaacac-taagaatttcttactaagttcat 150  Q
    ||||||||||||| |||||||||||||||||| ||||  ||  |||||||| |||||||||||||| ||||||||    
T  622 caattttaattgtgcccttactctgtcaaattcaaaagcgcataaaaacacttaagaatttcttaccaagttcat 696  T

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