View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_13 (Length: 266)
Name: NF6239_low_13
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 822864 - 823113
Alignment:
| Q |
16 |
atgcaaatgaagaattgagaaataatgaaatataaaagataactggaaaggtcacaaggatggggtaaaacagtattttaataatgaatgaagaagaaat |
115 |
Q |
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| T |
822864 |
atgcaaatgaagaattgagaaataatgaaatataaaagataactggaaaggtcacaaggatggggtaaaacagtattttaataatgaatgaagaagaaat |
822963 |
T |
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| Q |
116 |
taaaagttgatttcatccattcctcccaaaattggatggaaatcatggttctgataaagctctttgtgttaaataatataaaattttggaattaaatcaa |
215 |
Q |
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| T |
822964 |
taaaagttgatttcatccattcctccc-aaattggatggaaatcatggttctgataaagctctttgtgttaaataatataaaattttggaattaaatcaa |
823062 |
T |
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| Q |
216 |
gggaaatgatggtatagaaaaatgctaaatatagcgaatagtatattttca |
266 |
Q |
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| T |
823063 |
gggaaatgatggtatagaaaaatgctaaatatagcgaatagtatattttca |
823113 |
T |
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