View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6239_low_18 (Length: 241)
Name: NF6239_low_18
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38850514 - 38850292
Alignment:
| Q |
1 |
atgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatat |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38850514 |
atgtttgtgaggcattcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcacttacatttggatatat |
38850415 |
T |
|
| Q |
101 |
ctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850414 |
ctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgtatgatgatagttatgatttatg |
38850315 |
T |
|
| Q |
201 |
tccttcggcggaagagtggaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
38850314 |
tccttcggcggaagagtggaaaa |
38850292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 38320939 - 38321148
Alignment:
| Q |
14 |
attcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatatctatgagtttgag |
113 |
Q |
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|
||||||||||| ||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||||| ||| |||| || ||||||| | ||| |
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| T |
38320939 |
attcaaagagtcgaaggcaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaa |
38321038 |
T |
|
| Q |
114 |
ttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatgtccttcggcggaa |
213 |
Q |
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|
||||||||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||| |
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| T |
38321039 |
ctcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgtatgatgataattatgagttatgtccttcggtagaa |
38321138 |
T |
|
| Q |
214 |
gagtggaaaa |
223 |
Q |
| |
|
|| ||||||| |
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| T |
38321139 |
gaatggaaaa |
38321148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38325676 - 38325898
Alignment:
| Q |
1 |
atgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||| |||||||| |||||||| ||| ||| | |
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| T |
38325676 |
atgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaaggttggtggtgtcgatagttccgttcgcttgcatcaggactcgt |
38325775 |
T |
|
| Q |
101 |
ctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatg |
200 |
Q |
| |
|
|||||||| ||| ||||||||| || |||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||| |||| |||||| ||||| |
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|
| T |
38325776 |
ctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgaggataattatgagttatg |
38325875 |
T |
|
| Q |
201 |
tccttcggcggaagagtggaaaa |
223 |
Q |
| |
|
|||||||| ||||||| ||||| |
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|
| T |
38325876 |
tccttcggtagaagagtagaaaa |
38325898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 38313423 - 38313644
Alignment:
| Q |
2 |
tgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatatc |
101 |
Q |
| |
|
||||||| |||||||| ||||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||| || |
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|
| T |
38313423 |
tgtttgtaaggcattccaagagtagatggaaattttttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtc |
38313522 |
T |
|
| Q |
102 |
tatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatgt |
201 |
Q |
| |
|
|||||| ||| ||||||||| || ||||| |||| ||||||||||| | | ||| |||||||||| ||||||||||||||||| |||||||| |||| |
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|
| T |
38313523 |
tatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgtatgatgatgattatgattcatgt |
38313622 |
T |
|
| Q |
202 |
ccttcggcggaagagtggaaaa |
223 |
Q |
| |
|
||| |||| ||||| ||||||| |
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|
| T |
38313623 |
cctgcggcagaagactggaaaa |
38313644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38300181 - 38300403
Alignment:
| Q |
1 |
atgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatat |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||| |||| |||||||| ||| |||| | |
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|
| T |
38300181 |
atgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaaggttggtggtgttgattgttccgttcgcttgcatctggacacgc |
38300280 |
T |
|
| Q |
101 |
ctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatg |
200 |
Q |
| |
|
||| || ||| ||||||||| |||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
38300281 |
ctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtgtgtttgaaagtcttcacttgtatgatgatagttatgtgttatg |
38300380 |
T |
|
| Q |
201 |
tccttcggcggaagagtggaaaa |
223 |
Q |
| |
|
|||||||| ||||||||||||| |
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| T |
38300381 |
tccttcggtagaagagtggaaaa |
38300403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 38316831 - 38317035
Alignment:
| Q |
1 |
atgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatat |
100 |
Q |
| |
|
|||||||||||| ||||||| | ||||||| ||| |||||||||||| ||||||||||||||||||||||||||| ||| || | ||| |||| || | |
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|
| T |
38316831 |
atgtttgtgaggaattcaaaaaatagaaggacaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggacatgt |
38316930 |
T |
|
| Q |
101 |
ctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatg |
200 |
Q |
| |
|
|||||||| ||| ||||||||| || |||||||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||| ||| | ||||| |
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|
| T |
38316931 |
ctatgagtctgaactcaacttatgtgatgcttgaaagtgctcttaaatatcggcatgtatttgaaagttttcacttgtatgatgataattaccagttatg |
38317030 |
T |
|
| Q |
201 |
tcctt |
205 |
Q |
| |
|
||||| |
|
|
| T |
38317031 |
tcctt |
38317035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38308828 - 38309050
Alignment:
| Q |
1 |
atgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatat |
100 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| || ||| | || || | |
|
|
| T |
38308828 |
atgtttgtgaggcgatcaaagagtcacagggaaaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgttcgtttgcatctagacatgt |
38308927 |
T |
|
| Q |
101 |
ctatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatgatagttatgatttatg |
200 |
Q |
| |
|
||||||| ||| ||||||||| || ||||| |||| ||||||||||| | | || ||||||||| ||||||||||||| ||| ||||||||| ||| |
|
|
| T |
38308928 |
ctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcttgcatttgaaagtcttcacttgtatgacgatggttatgattcatg |
38309027 |
T |
|
| Q |
201 |
tccttcggcggaagagtggaaaa |
223 |
Q |
| |
|
|||| |||| ||||||||||||| |
|
|
| T |
38309028 |
tcctgcggcagaagagtggaaaa |
38309050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 184
Target Start/End: Original strand, 38306101 - 38306283
Alignment:
| Q |
2 |
tgtttgtgaggcattcaaagagtagaagggaaaattttaaggagtgctgtgaaaaggttggtggtgttgatagttcggttcgcttacatttggatatatc |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||| |||| ||||| |||||||| ||| |||| || || |
|
|
| T |
38306101 |
tgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaaggttggtggtattgacagttcagttcgcttgcatatggacatgtc |
38306200 |
T |
|
| Q |
102 |
tatgagtttgagttcaacttatatgttgcttgaaagagctcttaaataacggtgtgtgtttgaaagttttcacttgtatgatg |
184 |
Q |
| |
|
||||| | ||| ||||||||| || |||| || || ||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
38306201 |
tatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgtgtttgaaagttttcacttgtatgatg |
38306283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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