View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_2 (Length: 465)
Name: NF6239_low_2
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 692407 - 691961
Alignment:
| Q |
1 |
tggtacagtacagtggtggtagtaattgctctgcaaagcaaaattggcatcatatgaattggaattttctgttaattatggttccatttgtaacgttaaa |
100 |
Q |
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| T |
692407 |
tggtacagtacagtggtggtagtaattgctctgcaaagcaaaattggcatcatatgaattggaattttctgttaattatggttccatttgtaacgttaaa |
692308 |
T |
|
| Q |
101 |
ctgagcttcattctgaaaatctgaagcatatagtatcacataaaataatgataatgatattaatgaatacagcattttgattgattgattgatactgagt |
200 |
Q |
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| T |
692307 |
gcgagcttc----tgaaaatctgaagcatatagtatcgcataaaataatgataatgatattaatgaatacagcattttgattgattgat----actgagt |
692216 |
T |
|
| Q |
201 |
cctt-acatacatgtataaatgcaatagtacagaaaagaagtggatctgataatagtgcatgtgcgtagcttgaaaggaaagttcaactcttctacttca |
299 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
692215 |
cctttacatacatgtataaatgcaatagtacagaaaagaactggatctgataatagtgcatgtgcgtagcttgaaaggaaagttcaactcttctacttca |
692116 |
T |
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| Q |
300 |
agtaataggataacataaggcgttgtattctatctagttaattgaataaatgtgcatttattgtttaatcaaagggaagattcttgtatgcttcctttac |
399 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
692115 |
agtaataggataacataaggcgttgtat----tctagttaattgaataaatgtgcatttattgtttaatcaaagggaagattcttgtatgcttcctttac |
692020 |
T |
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| Q |
400 |
gggtcggtagtttgcttctttgaattttttctgagtttgaatacacattacctatgcta |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
692019 |
gggtcggtagtttgcttctttgaattttttctgagtttcaatacacattacctatgcta |
691961 |
T |
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