View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_21 (Length: 236)
Name: NF6239_low_21
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12954250 - 12954027
Alignment:
| Q |
1 |
taattaggaaaagggtatgaaaaaagtccaagaggatctttggtggaaagtgtgaaagagggaaattgaagaagtgaagaaaaccctaattgcggtgtag |
100 |
Q |
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| T |
12954250 |
taattaggaaaagggtatgaaaaaagtccaagaggatctttggtggaaagtgtgaaagagggaaattgaagaagtgaagaaaaccctaattgtggtgtag |
12954151 |
T |
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| Q |
101 |
aaagaaaagaaatggaaacactgaatttggaaagggtcaagggagggaggaatgtacgaatgcatgataagggtattttggggattgcaattttgggtta |
200 |
Q |
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| T |
12954150 |
aaagaaaagaaatggaaacactgaatttggaaagggtcaagggagggaggaatgtacgaatgcatgataagggtattttggggattgcaattttggg--- |
12954054 |
T |
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| Q |
201 |
agggttaattgatgatgctggtgatgatgtc |
231 |
Q |
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| T |
12954053 |
----ttaattgatgatgctggtgatgatgtc |
12954027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 12940270 - 12940077
Alignment:
| Q |
31 |
agaggatctttggtggaaagtgtgaaagagggaaattgaagaagtgaagaaaaccctaattgcggtgtagaaagaaaagaaatggaaacactgaatttgg |
130 |
Q |
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| T |
12940270 |
agaggatctttggtggaaagtgtgaaagagggaaattgaagaagtgaagaaaaccctaattgcggtgtagaaagaaaagaaatggaaacactgaatttgg |
12940171 |
T |
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| Q |
131 |
aaagggtcaagggagggaggaatgtacgaatgcatgataagggtattttggggattgcaattttgggttaagggttaattgatgatgctggtgatgatgt |
230 |
Q |
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| T |
12940170 |
aaagggtcaagggagggaggaatgtacgaatgcatgataagggtattttggggattgcaattttggg-------ttaattgatgatgctggtgatgatgt |
12940078 |
T |
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