View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6239_low_22 (Length: 235)

Name: NF6239_low_22
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6239_low_22
NF6239_low_22
[»] chr7 (1 HSPs)
chr7 (1-220)||(29622835-29623054)
[»] chr5 (6 HSPs)
chr5 (3-163)||(35367126-35367287)
chr5 (1-151)||(35755078-35755228)
chr5 (3-151)||(35410939-35411087)
chr5 (1-151)||(35386276-35386426)
chr5 (1-162)||(35376676-35376838)
chr5 (1-162)||(35423935-35424097)
[»] chr1 (3 HSPs)
chr1 (3-163)||(10420337-10420498)
chr1 (1-163)||(10409753-10409916)
chr1 (1-151)||(10415463-10415613)
[»] chr2 (3 HSPs)
chr2 (5-159)||(30626339-30626493)
chr2 (5-159)||(30663290-30663444)
chr2 (5-159)||(30671970-30672124)
[»] chr8 (2 HSPs)
chr8 (34-151)||(15294046-15294163)
chr8 (34-151)||(15474415-15474532)
[»] chr3 (1 HSPs)
chr3 (1-47)||(1154010-1154056)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29623054 - 29622835
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29623054 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattaatggatcctcaaaccattcaagtaatgatca 29622955  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggtaagttctttctatcccatgttttattttacaaatgattgctatcacttact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29622954 aattacttcttccacaattaagggaactataggatatgttcctcctggtaagttctttctatcccatgttttattttacaaatgattgctatcacttact 29622855  T
Q  201 atttattgtccgcgcacagg 220  Q
    ||||||||||||||||||||    
T  29622854 atttattgtccgcgcacagg 29622835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 163
Target Start/End: Original strand, 35367126 - 35367287
Alignment:
Q  3 agcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaa 102  Q
    ||||| |||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||||| |||| ||  | ||||||||||||| ||||||     
T  35367126 agcaacgttcttctggacgatgacactgtagcccacttgggagactttggcttagctaggctcattcttggaaccagagaccattcaagtaaagatcaag 35367225  T
Q  103 ttacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctatc 163  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35367226 ttaattcttccacaattaagggaactataggatatgttcctcctggtaaagttctttctatc 35367287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 35755078 - 35755228
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |  || | ||||||||||| |||||    
T  35755078 caagcaatgttcttcttgatgatgaaattgtagcccacttgggagactttggcctagctaggctcattcatggagctacagaacattcaagtaaagatca 35755177  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggtaa 151  Q
    | ||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  35755178 agttaattcctctacaattaagggaactataggatatgttcctcctggtaa 35755228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 35410939 - 35411087
Alignment:
Q  3 agcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaa 102  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||||||| || ||||||||||||| |||| || || | ||||||||||| ||||||     
T  35410939 agcaacgttcttcttgacgatgactttgtagcccacttgggagactttggcttggctaggctcattcttggaaccacagagcattcaagtaaagatcaag 35411038  T
Q  103 ttacttcttccacaattaagggaactataggatatgttcctcctggtaa 151  Q
    ||| || ||| |||||||| ||||||||||||||| |||||||||||||    
T  35411039 ttattttttctacaattaaaggaactataggatatattcctcctggtaa 35411087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 35386276 - 35386426
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||||| || |||||| |||||| |||| || || | ||||||||||| |||||    
T  35386276 caagcaacgttcttcttgacgatgactttgtagcccacttgggagactttggcttggctaggatcattcttggaaccacagagcattcaagtaaagatca 35386375  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggtaa 151  Q
    | ||| ||| || || ||||| ||||||||||||||| |||||||||||||    
T  35386376 agttatttcctctactattaaaggaactataggatatattcctcctggtaa 35386426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 35376676 - 35376838
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    ||||||||||||||||||||||||||  ||| |||||||| ||||||||||| ||||||||| || | |||||| |  || |  ||||||||||  ||||    
T  35376676 caagcaatgttcttcttgatgatgacggtgtggcccacttaggagactttggcttagctaggttcctccatggagctacagaatattcaagtaaaaatca 35376775  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctat 162  Q
    | ||| ||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  35376776 agttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat 35376838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 35423935 - 35424097
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    ||||||||||||||||||||||||||  |||  ||||||| |||||||||||  |||||||| || | |||||| |  || |  ||||||||||  ||||    
T  35423935 caagcaatgttcttcttgatgatgacggtgtgacccacttaggagactttggcgtagctaggttcctccatggagctacagaatattcaagtaaaaatca 35424034  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctat 162  Q
    | ||| ||| ||||||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  35424035 agttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctttctat 35424097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 10420498 - 10420337
Alignment:
Q  3 agcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaa 102  Q
    ||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||| |||| ||  | ||||||||||||| ||||||     
T  10420498 agcaacgttcttctggacgatgacattgtagctcacttgggagactttggcttagctaggctcattcttggaaccagagaccattcaagtaaagatcaag 10420399  T
Q  103 ttacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctatc 163  Q
    ||| |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||    
T  10420398 ttaattcttccacaatcaagggaagtataggatatgttcctcctggtaaagttctttctatc 10420337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 10409916 - 10409753
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    |||||||||||||||| |||||||||| |||||| ||||| ||||||||||| ||||||||||| |||| |||| |  || | ||||||||||| |||||    
T  10409916 caagcaatgttcttctcgatgatgacaatgtagctcacttaggagactttggcttagctaggctaattcgtggagctacagaacattcaagtaaagatca 10409817  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggt-aagttctttctatc 163  Q
    | ||| ||| || |||||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  10409816 agttatttcctctacaattaagggaactataggatatgttcctcccggtaaagttctttttatc 10409753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 10415613 - 10415463
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatca 100  Q
    ||||||| ||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |||| || || | ||||||||||| |||||    
T  10415613 caagcaacgttcttcttgacgatgacgttgtagcccacttgggagactttggcttagctaggctcattcttggagccacagagcattcaagtaaagatca 10415514  T
Q  101 aattacttcttccacaattaagggaactataggatatgttcctcctggtaa 151  Q
    | | | ||| || || ||||| ||||||||||||||| ||||| |||||||    
T  10415513 agtcatttcctctactattaaaggaactataggatatattcctactggtaa 10415463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 30626339 - 30626493
Alignment:
Q  5 caatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaatt 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||||| || ||    ||||||||   |||||| ||    
T  30626339 caatgttcttcttgatgatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagtt 30626438  T
Q  105 acttcttccacaattaagggaactataggatatgttcctcctggtaagttctttc 159  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30626439 aattcgtccacaattaagggaactataggatatgttcctcctggtaagttctttc 30626493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 30663290 - 30663444
Alignment:
Q  5 caatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaatt 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||||| || ||    ||||||||   |||||| ||    
T  30663290 caatgttcttcttgatgatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagtt 30663389  T
Q  105 acttcttccacaattaagggaactataggatatgttcctcctggtaagttctttc 159  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30663390 aattcgtccacaattaagggaactataggatatgttcctcctggtaagttctttc 30663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 30671970 - 30672124
Alignment:
Q  5 caatgttcttcttgatgatgacattgtagcccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaatt 104  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||||| || ||    ||||||||   |||||| ||    
T  30671970 caatgttcttcttgatgatgacatggtagcccacttgggagactttggattggcaaggttaattcatggagccacagcatattcaagtgtagatcaagtt 30672069  T
Q  105 acttcttccacaattaagggaactataggatatgttcctcctggtaagttctttc 159  Q
    | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30672070 aattcgtccacaattaagggaactataggatatgttcctcctggtaagttctttc 30672124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 15294046 - 15294163
Alignment:
Q  34 cccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaattacttcttccacaattaagggaactatagg 133  Q
    ||||||||||||||||||| || |||||||||||||||||| ||  | | ||||||||||| ||| || ||| | | || |  ||||| |||||||||||    
T  15294046 cccacttgggagactttggcttggctaggctcattcatggaaccatagagcattcaagtaaagataaagttattgcctctaagattaaaggaactatagg 15294145  T
Q  134 atatgttcctcctggtaa 151  Q
    |||| |||||||||||||    
T  15294146 atatattcctcctggtaa 15294163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 151
Target Start/End: Original strand, 15474415 - 15474532
Alignment:
Q  34 cccacttgggagactttggattagctaggctcattcatggatcctcaaaccattcaagtaatgatcaaattacttcttccacaattaagggaactatagg 133  Q
    ||||||||||||||||||| || |||||||||||||||||| ||  | | ||||||||||| ||| || ||| | | || |  ||||| |||||||||||    
T  15474415 cccacttgggagactttggcttggctaggctcattcatggaaccatagagcattcaagtaaagataaagttattgcctctaagattaaaggaactatagg 15474514  T
Q  134 atatgttcctcctggtaa 151  Q
    |||| |||||||||||||    
T  15474515 atatattcctcctggtaa 15474532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1154010 - 1154056
Alignment:
Q  1 caagcaatgttcttcttgatgatgacattgtagcccacttgggagac 47  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  1154010 caagcaatgttcttcttgatgatgacaatgtagcccacttgggagac 1154056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University