View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6239_low_23 (Length: 212)

Name: NF6239_low_23
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6239_low_23
NF6239_low_23
[»] chr6 (17 HSPs)
chr6 (11-90)||(12163182-12163261)
chr6 (11-87)||(12163632-12163708)
chr6 (11-90)||(12163281-12163360)
chr6 (14-63)||(12164229-12164278)
chr6 (11-69)||(12163362-12163420)
chr6 (29-82)||(12210680-12210733)
chr6 (14-90)||(12163470-12163546)
chr6 (14-69)||(12163710-12163765)
chr6 (14-69)||(12210753-12210808)
chr6 (14-63)||(12163971-12164020)
chr6 (35-87)||(12192233-12192285)
chr6 (14-69)||(12163551-12163606)
chr6 (11-66)||(12163683-12163738)
chr6 (41-87)||(12179083-12179129)
chr6 (11-66)||(12163524-12163579)
chr6 (29-90)||(12211086-12211147)
chr6 (14-66)||(12163335-12163387)


Alignment Details
Target: chr6 (Bit Score: 68; Significance: 1e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 12163261 - 12163182
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12163261 ttatacttatacactggtggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 12163182  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 12163708 - 12163632
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggctt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||| ||||||||    
T  12163708 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggtggtgggggagatgggtatttatatggctt 12163632  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 12163360 - 12163281
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| |  ||||| |||||||||||    
T  12163360 ttatacttgtaaactggtggaggaggtgacttgtacttgtaaactggtggtggtggagatggatatttatatggcttctt 12163281  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12164278 - 12164229
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtgg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12164278 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggcggtgg 12164229  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 12163420 - 12163362
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    ||||||||||| || || ||||||||||||||||||||||||||||| |||||||||||    
T  12163420 ttatacttgtacaccggtggaggaggtgatttgtacttgtaaactggtggtggaggaga 12163362  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 12210733 - 12210680
Alignment:
Q  29 ggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtat 82  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  12210733 ggaggaggtgatttgtacttgtatactggtggtggaggagaagggtatttgtat 12210680  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 12163546 - 12163470
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    |||||||| || || || |||||||||||||||||||||||||| ||||| ||||| | |||||| |||||||||||    
T  12163546 tacttgtacaccggtggtggaggtgatttgtacttgtaaactggcggtggtggagatgggtatttatatggcttctt 12163470  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12163765 - 12163710
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    |||||||||||||| ||||||||||| || |||||||||||||| |||||||||||    
T  12163765 tacttgtaaactgggggaggaggtgacttatacttgtaaactggtggtggaggaga 12163710  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12210808 - 12210753
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||    
T  12210808 tacttgtaaactgggggaggaggtgacttgtacttgtaaactggtggtgggggaga 12210753  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 12164020 - 12163971
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtgg 63  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||||    
T  12164020 tacttgtaaactgggggaggaggtgacttgtacttgtaaactggtggtgg 12163971  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 12192285 - 12192233
Alignment:
Q  35 ggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggctt 87  Q
    |||||||| |||||||||||||| ||||| || ||||||||||||||||||||    
T  12192285 ggtgatttatacttgtaaactggtggtggtggggaagcgtatttgtatggctt 12192233  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 12163606 - 12163551
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggaggaga 69  Q
    |||||||| ||||| |||||||| ||||| |||||||||||||| |||||||||||    
T  12163606 tacttgtacactggtggaggaggggatttatacttgtaaactggtggtggaggaga 12163551  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12163738 - 12163683
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggagg 66  Q
    ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||    
T  12163738 ttatacttgtaaactggtggtggaggagatttatacttgtaaactggaggaggagg 12163683  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 12179129 - 12179083
Alignment:
Q  41 ttgtacttgtaaactggaggtggaggagaagcgtatttgtatggctt 87  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  12179129 ttgtatttgtaaactggtggtggtggagaagcgtatttgtatggctt 12179083  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 12163579 - 12163524
Alignment:
Q  11 ttatacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggagg 66  Q
    ||||||||||||||||| || ||||| |||||||||||||| || || ||||||||    
T  12163579 ttatacttgtaaactggtggtggaggagatttgtacttgtacaccggtggtggagg 12163524  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 12211147 - 12211086
Alignment:
Q  29 ggaggaggtgatttgtacttgtaaactggaggtggaggagaagcgtatttgtatggcttctt 90  Q
    |||||||| ||||| |||||||||||||| ||||| ||||| | ||| |||||||| |||||    
T  12211147 ggaggaggagatttatacttgtaaactgggggtggtggagatgggtacttgtatggtttctt 12211086  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12163387 - 12163335
Alignment:
Q  14 tacttgtaaactggaggaggaggtgatttgtacttgtaaactggaggtggagg 66  Q
    |||||||||||||| || ||||| ||||| |||||||||||||| || |||||    
T  12163387 tacttgtaaactggtggtggaggagatttatacttgtaaactggtggaggagg 12163335  T

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