View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_3 (Length: 364)
Name: NF6239_low_3
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 41064096 - 41064468
Alignment:
| Q |
1 |
tcatcaaaccaatctaaatgagtttgaataccaaaatttcaactttttatttattgaaatatttattatttactttgagaaaattaatttgatacttcca |
100 |
Q |
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| T |
41064096 |
tcatcaaaccaatctaaatgagttcgaataccaaagtttcaactttttatttattgaaatatttattatttactttgagaaaattaatttgatacttcca |
41064195 |
T |
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| Q |
101 |
taaat---ttaaagtttcttt------tacattacaactaaaaaatataattggatcatggtttggtgagagcattgagtagaatggatgcaaaaattta |
191 |
Q |
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| T |
41064196 |
taaatattttaaagtttcttttacttttacattacaactaaaaaatataattggatcatggtttggtgagagcattgagtagaatggatgcaaaaattta |
41064295 |
T |
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| Q |
192 |
caccacttatggtttaaactttttaaacgggtttcccctaatattgtagttaaaagttctctgaagtattgtagattatcttttattcaactaggtagca |
291 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41064296 |
caccacttatggtttaaactttttaaatgggttccccctaatattgtagttaaaagttctctgaagtattgtagattatcttttattcaactaggtagca |
41064395 |
T |
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| Q |
292 |
tttgtatgtcatactatttcaattgtgtgttttttctgttatttctcttcattcattaatcactgtgaatttt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41064396 |
tttgtatgtcatactatttcaattgtgtgttttttctgttatttctcttcattcattaatcacggtgaatttt |
41064468 |
T |
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