View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_5 (Length: 338)
Name: NF6239_low_5
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 2 - 320
Target Start/End: Complemental strand, 31851341 - 31851023
Alignment:
| Q |
2 |
tactggatactcatgtcgatgaatatcttcaactactttgattcacatttacttaattcacgatgaatgagataactatgtgctaaattctgatttatct |
101 |
Q |
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| T |
31851341 |
tactggatactcatgtcgatgaatatcttcaactactttgattcacatttacttaattcacgatgaatgagataactatgtgctaaattctgatttatct |
31851242 |
T |
|
| Q |
102 |
cctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaagtagtgatatgtcacctcctcgacg |
201 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31851241 |
cctccatataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaagtagtgatatgtcacctcctcgacg |
31851142 |
T |
|
| Q |
202 |
aaaacacaatactaatttggatcgtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31851141 |
aaaacacaatactaatttggatcgtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttg |
31851042 |
T |
|
| Q |
302 |
atttctgttaaggaactca |
320 |
Q |
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||||||||||||||||||| |
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| T |
31851041 |
atttctgttaaggaactca |
31851023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 40425314 - 40425247
Alignment:
| Q |
5 |
tggatactcatgtcgatgaatatcttcaactactt-tgattcacatttacttaattcacgatgaatga |
71 |
Q |
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| T |
40425314 |
tggatactcgtgtggatgcatatcttcaactacttatgattcacgtttaattaattcgcaatgaatga |
40425247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 207
Target Start/End: Original strand, 18397703 - 18397824
Alignment:
| Q |
87 |
aattctgatttatctcctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
185 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
18397703 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagctgtagcttgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
18397802 |
T |
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| Q |
186 |
tgtcacctcctcgacgaaaaca |
207 |
Q |
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|||||||||||||||| ||||| |
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| T |
18397803 |
tgtcacctcctcgacggaaaca |
18397824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 87 - 207
Target Start/End: Complemental strand, 11471089 - 11470968
Alignment:
| Q |
87 |
aattctgatttatctcctccttataaatacagagatcagagtattacaattgtagcttgtgaaccaaggttgtctaaatcaaaatttgaag-tagtgata |
185 |
Q |
| |
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||||||||||||||||||||| |||| |||||||||||||| ||||| ||||||| |||||||||||| |||| |||||| ||||||| |||||||| |
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| T |
11471089 |
aattctgatttatctcctcctcgtaaacacagagatcagagtgttacagatgtagctcgtgaaccaaggtcatctagatcaaagtttgaagatagtgata |
11470990 |
T |
|
| Q |
186 |
tgtcacctcctcgacgaaaaca |
207 |
Q |
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|||||||||||||||| ||||| |
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| T |
11470989 |
tgtcacctcctcgacggaaaca |
11470968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 315
Target Start/End: Complemental strand, 11470692 - 11470602
Alignment:
| Q |
225 |
gtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaagga |
315 |
Q |
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|||| |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
11470692 |
gtgacctctctccaccaaggaagaatccaaaggagttatccattccagcatctgttaatgaaagaaaaacaggtttaatttctggtaagga |
11470602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 225 - 315
Target Start/End: Original strand, 18398100 - 18398190
Alignment:
| Q |
225 |
gtgatctctctccaccaaggaagaatccagaggagccattcattccagcatctgttaatgaaagaaaaagtggtttgatttctgttaagga |
315 |
Q |
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|||| |||||||||||||||||||||||| ||||| || |||||| |||||| | |||||||| |||| ||||| ||||||| |||||| |
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| T |
18398100 |
gtgacctctctccaccaaggaagaatccaaaggagttatccattcctgcatctataaatgaaaggaaaataggtttaatttctggtaagga |
18398190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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