View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6239_low_6 (Length: 327)
Name: NF6239_low_6
Description: NF6239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6239_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 9603193 - 9603486
Alignment:
| Q |
19 |
aagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaactaaaaagggtaaannnnnnnnnn |
118 |
Q |
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| T |
9603193 |
aagcttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaactaaaaagggtaaaaaaaaatatt |
9603292 |
T |
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| Q |
119 |
nnnnnnnntttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttgacagatcctaaaagtgagagaccaggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603293 |
aat-----tttcatatactttaaagactaaatatgagagacaataatgcggttctaatgatattttattgttgacagatcctaaaagtgagagaccaggt |
9603387 |
T |
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| Q |
219 |
gtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcattgtctcaagatgtgttacctttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9603388 |
gtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcattgtctcaagatgtgttacctttg |
9603486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 9589103 - 9589164
Alignment:
| Q |
233 |
aagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatcat |
294 |
Q |
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| T |
9589103 |
aagagatgaaaattttggtcacttaaagtcatcagacttccttacatacggattaaaatcat |
9589164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 307
Target Start/End: Complemental strand, 6458065 - 6457950
Alignment:
| Q |
192 |
acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaat |
291 |
Q |
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| T |
6458065 |
acagatcctaagagtgagaaaccgggtgtgatttatgttccaagagatgaaaattttggtcacttgaagtcatcagacttccttatgtatggaataaaat |
6457966 |
T |
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| Q |
292 |
cattgtctcaagatgt |
307 |
Q |
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| T |
6457965 |
cactgtctcaaaatgt |
6457950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 317
Target Start/End: Complemental strand, 6451975 - 6451850
Alignment:
| Q |
192 |
acagatcctaaaagtgagagaccaggtgtgatgtatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaat |
291 |
Q |
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||||||| ||| ||||||| ||| |||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| | |
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| T |
6451975 |
acagatcttaagagtgagaaacctggtgccatttatgttccaagagatgaaaattttggtcacttgaagtcatcagactttcttatgtatggaataaagt |
6451876 |
T |
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| Q |
292 |
cattgtctcaagatgtgttacctttg |
317 |
Q |
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||||||| ||||| || || |||||| |
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| T |
6451875 |
cattgtcacaagacgttttgcctttg |
6451850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 6452146 - 6452071
Alignment:
| Q |
22 |
cttgctcgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaacta |
97 |
Q |
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| T |
6452146 |
cttgttcgtccaatccttggaggatctagcacccatccctaccctcgtagggttagaactggtagaaaaccaacta |
6452071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 6458233 - 6458166
Alignment:
| Q |
28 |
cgtccggtccttggagggtctagcactcatccttaccctcgaagggttagaagtggtcgaaaaccaac |
95 |
Q |
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| T |
6458233 |
cgtcctgtccttgggggatcaagcacctatccctaccctcgcagggttagaagtggtagaaaaccaac |
6458166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 225 - 292
Target Start/End: Original strand, 42687709 - 42687776
Alignment:
| Q |
225 |
tatgttccaagagatgaaaattttggacacttgaagtcatctgacttccttacatatggaataaaatc |
292 |
Q |
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| T |
42687709 |
tatgttccaagagatgaaaattttggtcacttgaagtcctcagactttctcacatatggaataaaatc |
42687776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 42687290 - 42687340
Alignment:
| Q |
23 |
ttgctcgtccggtccttggagggtctagcactcatccttaccctcgaaggg |
73 |
Q |
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| T |
42687290 |
ttgctcgccctgttcttggagggtctagcacacatccttaccctcgcaggg |
42687340 |
T |
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