View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_high_11 (Length: 349)
Name: NF6240_high_11
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 11367311 - 11367630
Alignment:
| Q |
15 |
gggagggagtgggtaagaggtcaggcctccatagcatggccttatcggttcaccaactttccggttatggtgacacactcgaggagtaataaagtgattc |
114 |
Q |
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| T |
11367311 |
gggagggagtgggtaagaggtcaggcctccatagcatggccttatcggttcaccaactttccggttatggtgacacactcgaggagtaataaagtgattc |
11367410 |
T |
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| Q |
115 |
gtaaaggaataacgttggtttggaatgcgaccttatgggtgttatggaatgtgagaaatggtaaaatctttgagactaaagattgtgcacaggaagaagt |
214 |
Q |
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| T |
11367411 |
gtaaaggaataacgttggtttggaatgcgaccttatgggtgttatggaatgtgagaaatggtaaaatctttgagactaaagattgtgcacaggaagaagt |
11367510 |
T |
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| Q |
215 |
gatcgagaaaataaaagtggtgtcttggaagtggttccttagtagaatggcgaagagctcttgtttataatatgaatggtggtggaacccaattatgtgc |
314 |
Q |
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| T |
11367511 |
gatcgagaaaataaaagtggtgtcttggaagtggttccttagtagaatggcgaagagctcttgtttataatatgaatggtggtggaacccaattatgtgc |
11367610 |
T |
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| Q |
315 |
tttgccttacgatgtgtttg |
334 |
Q |
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| T |
11367611 |
tttgccttacgatgtgtttg |
11367630 |
T |
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