View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6240_high_17 (Length: 288)

Name: NF6240_high_17
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6240_high_17
NF6240_high_17
[»] chr4 (12 HSPs)
chr4 (1-288)||(38145665-38145952)
chr4 (37-288)||(38149509-38149760)
chr4 (46-124)||(36108009-36108087)
chr4 (46-124)||(21482741-21482819)
chr4 (47-135)||(38086358-38086446)
chr4 (64-135)||(36080163-36080234)
chr4 (65-134)||(37954200-37954269)
chr4 (47-135)||(38072848-38072936)
chr4 (47-122)||(38058520-38058595)
chr4 (47-122)||(38061859-38061934)
chr4 (58-124)||(34971558-34971624)
chr4 (82-124)||(36100786-36100828)
[»] chr2 (3 HSPs)
chr2 (1-287)||(11786869-11787155)
chr2 (1-122)||(11803584-11803705)
chr2 (67-119)||(11917650-11917702)
[»] chr6 (1 HSPs)
chr6 (46-124)||(6838770-6838848)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 38145665 - 38145952
Alignment:
Q  1 agaaaatatggtcttggagttgataatgtcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctatttt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145665 agaaaatatggtcttggtgttgataatgtcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctatttt 38145764  T
Q  101 gggctataagaggtggtggaggtggaagctttggtatacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145765 gggctataagaggtggtggaggtggaagctttggtatacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcac 38145864  T
Q  201 taaaactctagaacaaggtgctacaaaaattcttcatagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagtc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145865 taaaactctagaacaaggtgctacaaaaattcttcatagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagtc 38145952  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 37 - 288
Target Start/End: Original strand, 38149509 - 38149760
Alignment:
Q  37 gctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggta 136  Q
    |||||||| |||||||| || || || ||||||||||| ||||| |||||||| || ||||||||||| |||||||| || ||||| || ||||| ||      
T  38149509 gctcgaattgttgatgctaatggaaaaattcttgacaggaaagcaatgggagaagacctattttgggcaataagaggaggcggaggaggtagcttcggag 38149608  T
Q  137 tacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcactaaaactctagaacaaggtgctacaaaaattcttca 236  Q
    |  |||| ||||||||||| ||  | |||||||| |||  ||| ||||||||||| || || || || | ||||||||||||||  |  ||| ||||| |    
T  38149609 ttattctctggtggaagatcaaattagttcctgtgccaaaaactgtgacagttttcacagtaacaaagagtctagaacaaggtggaaacaaacttcttta 38149708  T
Q  237 tagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagtc 288  Q
    |||||||||| ||||||||||   ||||||||||||||||||||| ||||||    
T  38149709 tagatggcaacaagtagcaccaaatattgatgaaaatctcttcatcagagtc 38149760  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 36108009 - 36108087
Alignment:
Q  46 gttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 124  Q
    |||||||  |||||||| |||||||| |||||| | |||||||| ||||| ||||||||||||||||||||||| ||||    
T  36108009 gttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtg 36108087  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 21482741 - 21482819
Alignment:
Q  46 gttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 124  Q
    ||||||| ||| ||||| || ||||| |||||| | |||||||| ||||| ||||||||||||||||||||||| ||||    
T  21482741 gttgatgtgaatggtaatatccttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtg 21482819  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 38086358 - 38086446
Alignment:
Q  47 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggt 135  Q
    |||||| ||||||||   ||||||||||| |||| ||||| |||||| | ||||||||||| |||||||||||||| | ||| ||||||    
T  38086358 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaggatttcttttgggctattagaggtggtggaggagcaagttttggt 38086446  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 36080163 - 36080234
Alignment:
Q  64 attcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggt 135  Q
    |||||||| |||||| | |||||||| ||| |||||||||||||||| |||||||| |||| ||| ||||||    
T  36080163 attcttgatagaaaatcaatgggagaagatttattttgggctataaggggtggtggtggtgcaagttttggt 36080234  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 37954200 - 37954269
Alignment:
Q  65 ttcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttgg 134  Q
    ||||||||||| || | ||||| |||||||| ||||||||||| ||||| |||||||| | |||||||||    
T  37954200 ttcttgacagagaatcgatgggtgaggatctgttttgggctattagaggaggtggaggagcaagctttgg 37954269  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 38072848 - 38072936
Alignment:
Q  47 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtggaagctttggt 135  Q
    |||||| ||||||||   ||||||||||| |||| ||||| || ||| | ||||||||||| |||||||||||||| | ||| ||||||    
T  38072848 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggaggagcaagttttggt 38072936  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 122
Target Start/End: Original strand, 38058520 - 38058595
Alignment:
Q  47 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggagg 122  Q
    |||||| ||||||||   ||||||||||| |||| ||||| || ||| | ||||||||||| ||||||||||||||    
T  38058520 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaagatttgttttgggctattagaggtggtggagg 38058595  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 122
Target Start/End: Complemental strand, 38061934 - 38061859
Alignment:
Q  47 ttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggagg 122  Q
    |||||| ||||||||   ||||||||||| |||| ||||| |||||| | ||||||||||| ||||| ||||||||    
T  38061934 ttgatgtgaagggtaggtttcttgacagagaagcaatgggtgaggattttttttgggctattagaggaggtggagg 38061859  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 34971624 - 34971558
Alignment:
Q  58 ggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 124  Q
    ||||| |||||||| |||||  | |||||||| ||||| ||||||||||| ||||||||||| ||||    
T  34971624 ggtaatattcttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtg 34971558  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 36100786 - 36100828
Alignment:
Q  82 atgggagaggatctattttgggctataagaggtggtggaggtg 124  Q
    |||||||| |||||||||||||||||||| |||||||| ||||    
T  36100786 atgggagaagatctattttgggctataaggggtggtggtggtg 36100828  T

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Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 11787155 - 11786869
Alignment:
Q  1 agaaaatatggtcttggagttgataatgtcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctatttt 100  Q
    ||||| ||||||||||||| |||||||||  | || ||   ||| || |||||||| || || ||||| || |||||| | ||||| |||||  | ||||    
T  11787155 agaaagtatggtcttggagctgataatgttctcgacgcaaaaatagtcgatgcgaacggaaatattctcgatagaaaatctatgggggaggaattctttt 11787056  T
Q  101 gggctataagaggtggtggaggtggaagctttggtatacttctttggtggaagataaagcttgttcctgttccaccaacagtgacagtttttactgtcac 200  Q
    ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||  ||| ||||| |||||||| || ||    
T  11787055 gggctattagaggtggtggaggtggaagttttggtattcttctttggtggaagataaaacttgttcctgttccaaaaaccgtgacggtttttaccgttac 11786956  T
Q  201 taaaactctagaacaaggtgctacaaaaattcttcatagatggcaagaagtagcaccttttattgatgaaaatctcttcattagagt 287  Q
     ||||   ||||||||| ||| |  || ||| |||||| ||||||||||||||||||   |||||||||||||||||| || |||||    
T  11786955 caaaagcttagaacaagatgcaagtaagattgttcataaatggcaagaagtagcaccaactattgatgaaaatctctttatgagagt 11786869  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11803705 - 11803584
Alignment:
Q  1 agaaaatatggtcttggagttgataatgtcttagatgctcgaatcgttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctatttt 100  Q
    |||||||||||||||| || |||||||||  | ||||||| ||| || ||||  || || || || ||  | ||||||   ||||| |||||||||||||    
T  11803705 agaaaatatggtcttgcagctgataatgtaattgatgctcaaatggtagatgttaatggaaagatcctaaatagaaaattgatgggtgaggatctatttt 11803606  T
Q  101 gggctataagaggtggtggagg 122  Q
    ||||||||||||| ||||||||    
T  11803605 gggctataagaggaggtggagg 11803584  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 11917650 - 11917702
Alignment:
Q  67 cttgacagaaaagccatgggagaggatctattttgggctataagaggtggtgg 119  Q
    ||||| |||||| | |||||||| ||||| |||||||||||||||||||||||    
T  11917650 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtgg 11917702  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 6838770 - 6838848
Alignment:
Q  46 gttgatgcgaagggtaacattcttgacagaaaagccatgggagaggatctattttgggctataagaggtggtggaggtg 124  Q
    |||||||  |||||||| |||||||| |||||| | |||||||| ||||| |||||||| |||||||||||||| ||||    
T  6838770 gttgatgttaagggtaatattcttgatagaaaatcaatgggagaagatcttttttgggccataagaggtggtggtggtg 6838848  T

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