View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_high_19 (Length: 251)
Name: NF6240_high_19
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 439750 - 439971
Alignment:
| Q |
1 |
ccattaaaagttttaaataaggagccaaaattaaataagattgcacttaatacttaacagtcataagtgcaatcttgagtgtttgcttaaagatagtcaa |
100 |
Q |
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| T |
439750 |
ccattaaaagttttaaataaggatccaaaattaaataagattgcacttaatacttaacagtcataagtgcaatcttgagtgtttgcttaaagatagtcaa |
439849 |
T |
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| Q |
101 |
ggaccaatgatgctatcaaacaaagatctcatgctattcacactaatttctctcttttagcttctcaaaccgattcaattaatagatggaaggaagaaaa |
200 |
Q |
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| T |
439850 |
ggaccaatgatgctatcaaacaaagatctcatgctattcacactaatttctctcttttagcttctcaaaccaattcaattaacagatggaaggaagaaaa |
439949 |
T |
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| Q |
201 |
actcaactgcactaacaatatc |
222 |
Q |
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| T |
439950 |
attcaactgcactaacaatatc |
439971 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 24414328 - 24414387
Alignment:
| Q |
165 |
tcaaaccgattcaattaatagatggaaggaagaaaaactcaa--ctgcactaacaatatc |
222 |
Q |
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|||||||||| |||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
24414328 |
tcaaaccgatacaattaatagatggaaggaagaaatcttcaattctgcactaacaatatc |
24414387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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