View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6240_high_26 (Length: 225)
Name: NF6240_high_26
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_high_26 |
 | |
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| [»] scaffold0320 (1 HSPs) |
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| [»] scaffold0442 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 7054424 - 7054228
Alignment:
| Q |
16 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7054424 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtagtagtataagcaagcttgaaaaagagggcacaagaaagatcaaa |
7054325 |
T |
|
| Q |
115 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
7054324 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgctcaagtattat |
7054228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 16613531 - 16613370
Alignment:
| Q |
53 |
tgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagc |
151 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| ||||||| |||||| |||||||||| |
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|
| T |
16613531 |
tgaatcaatgagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaagcaatatggaaacaaagc |
16613432 |
T |
|
| Q |
152 |
cacatagtgggatgaaaagaccaagtagtaccaggatga--atatacatgcgcaagtattat |
211 |
Q |
| |
|
||| |||| |||||||||||||||||||| | |||||| |||||||| | |||||||||| |
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|
| T |
16613431 |
cacgtagtaggatgaaaagaccaagtagtgcggggatgattatatacattctcaagtattat |
16613370 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 9991180 - 9991019
Alignment:
| Q |
53 |
tgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagc |
151 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
9991180 |
tgaatcaatgagggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagc |
9991081 |
T |
|
| Q |
152 |
cacatagtgggatgaaaagaccaagtagtaccaggatga--atatacatgcgcaagtattat |
211 |
Q |
| |
|
||| |||| |||||||||| |||||||| | |||||| |||||||||| |||||||||| |
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|
| T |
9991080 |
cacgtagttggatgaaaaggccaagtagagcggggatgattatatacatgctcaagtattat |
9991019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 1702528 - 1702367
Alignment:
| Q |
53 |
tgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaagtaccaagagatggtgcaaacaatatagaaacaaagc |
151 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| ||||||||||| ||||| ||| ||||||||||||||||||| |||||||| ||||| |||||||||| |
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|
| T |
1702528 |
tgaatcaatgggggaagtagtagtataagcaagcttgaaaaagaaggcactagatagatcaaagtaccaagagaaggtgcaaaaaatatggaaacaaagc |
1702429 |
T |
|
| Q |
152 |
cacatagtgggatgaaaagaccaagtagtaccaggatga--atatacatgcgcaagtattat |
211 |
Q |
| |
|
||| |||| |||||||||| |||||||| | |||||| |||||||||| |||||||||| |
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|
| T |
1702428 |
cacgtagtaggatgaaaaggccaagtagagcggggatgattatatacatgctcaagtattat |
1702367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 13712 - 13908
Alignment:
| Q |
16 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
13712 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtagtagtataagcaagcttgaaaaagagggcacaagaaagatcaaa |
13811 |
T |
|
| Q |
115 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
13812 |
gtaccaagtgatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagacctagtagtacgagaatgaatatacatgcggaagtattat |
13908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 9290750 - 9290946
Alignment:
| Q |
16 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
9290750 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtagtagtataagcaagcttgaaaaagagggcacgagaaagatcaaa |
9290849 |
T |
|
| Q |
115 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
9290850 |
gtaccaagagatggtgcaagcaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtactaggatgaatatacatgctcaagtattat |
9290946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 8212489 - 8212684
Alignment:
| Q |
16 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
8212489 |
caattttgattcatgtattgaataatgctaggttttttgaatcaaagagggaagtagtagtataagcaagcttgaaaaagagggcacaagaaatatcaaa |
8212588 |
T |
|
| Q |
115 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| |
|
|
| T |
8212589 |
gtaccaagagatggtgcaaaaaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtacgaggataaatat-catgcttaagtattat |
8212684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 12267 - 12071
Alignment:
| Q |
16 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
12267 |
caattttgattcatgtattgaagaatgctaggttttttcaatcaaatagggaagtagtagtataagcaagcttaaaaaagagggcacaagaaagatcaaa |
12168 |
T |
|
| Q |
115 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
12167 |
gtaccaagagatggtgcaaacaatatagaaacaaagccacatagttggatgaaaagaccaagtagtacgaggatgaatatacatgctcaagtattat |
12071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 38981056 - 38981248
Alignment:
| Q |
16 |
caattttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaacttgaaaaagagggcacaagaaagatcaaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38981056 |
caattttgattcatgtattgaagaatgctaggttttttgaatgaaagagggaagtggtagtataagc---ttgaaaaagagggcacaagaaagatcaaag |
38981152 |
T |
|
| Q |
116 |
taccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38981153 |
taccaagagatggtgcaaacaatatagaaacaaagccgcatagtgggatgaaaagaccaagtagtacgaggatgaatatacatgctcaagtattat |
38981248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 24867301 - 24867137
Alignment:
| Q |
18 |
attttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagca--acttgaaaaagagggcacaagaaagatcaaag |
115 |
Q |
| |
|
||||| ||| ||||||||||||| | ||||| | |||||||||||| ||||||||||||||||||| ||||||||||| ||||| | | || |||||| |
|
|
| T |
24867301 |
atttttatttatgtattgaagaacgataggtctcttgaatcaaagaaggaagtaatagtataagcaatacttgaaaaaggaggcaccaaatagttcaaag |
24867202 |
T |
|
| Q |
116 |
taccaagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagt |
180 |
Q |
| |
|
|| || ||| |||||||||||||| |||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
24867201 |
aacaaaaagaaggtgcaaacaatatgagaacaaagccaaatagtgggatgaaaaggccaagtagt |
24867137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 51424946 - 51425138
Alignment:
| Q |
20 |
tttgattcatgtattgaagaatgctaggttttttgaatcaaagagggaagtaatagtataagcaa-cttgaaaaagagggcacaagaaagatcaaagtac |
118 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51424946 |
tttgattcatgaattgaagaatgctaggttttttgaatcaaagagggaagtagtagaataagcaagcttgaaaaagagggcacaagaaagatcaaagtac |
51425045 |
T |
|
| Q |
119 |
caagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagaccaagtagtaccaggatgaatatacatgcgcaagtattat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
51425046 |
caagagatggtgcaaacaatatagaaacaaagccacatagtgggatgaaaagatcaagtagtacaaggatgaatatacattctcaagtattat |
51425138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 24999629 - 24999678
Alignment:
| Q |
107 |
agatcaaagtaccaagagatggtgcaaacaatatagaaacaaagccacat |
156 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||| |||||||||| |
|
|
| T |
24999629 |
agatcaaagtaccaagagaaggtgcaaacaatatggaaataaagccacat |
24999678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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