View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_1 (Length: 651)
Name: NF6240_low_1
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 2176087 - 2175602
Alignment:
| Q |
1 |
atgaaggaacacgtgttgattactatatttgctaatgctggaagtgcttttggatctgggtctccttatgctgttgggattgttaatattattaaagcgt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176087 |
atgaaggaacatgtgttgattactatatttgctaatgctggaagtgcttttggatctgggtctccttatgctgttgggattgttaatattattaaagcgt |
2175988 |
T |
|
| Q |
101 |
tttatggaaggagtatttcttttcatgctgcttggcttctcattatcaccactcaggtgaggtttcttttcttgatgctaattattgatagttgtaattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2175987 |
tttatggaaggagtatttcttttcatgctgcttggcttctcattatcaccactcaggtgaggtttcttttcttgatgctaattattgttagttgtaattt |
2175888 |
T |
|
| Q |
201 |
tgaaaatcataatctcattatcttctttt----------aagctcgttaaatgttgagaagtgataaattgcaaattcaaacatatgtcaaatcatatca |
290 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2175887 |
tgaaaatcataatctcattatcttcttttttaagctctagagctcgttaaatgttgagaagtgataaattgcaaattcaaacatatgtcaaatcatatta |
2175788 |
T |
|
| Q |
291 |
tagatatttactattatcttttaccatctaaaatgtatttatctcataacatattttctacttatcttcatacttctctcgttttatatataaaataaag |
390 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
2175787 |
tagatatttacaattatcttttaccatctaaaatgtatttatctcataacatattttctacttatcttcatacttctctcgttctatatataaaagaaag |
2175688 |
T |
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| Q |
391 |
ttaatcaacaaaagataacgtatatgattcaaatcttatgttaggtagtagatctgtttgtttatatatctcattttgacttgtta |
476 |
Q |
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| T |
2175687 |
ttaatcaacaaaaggtaacgtatatgattcaaatcttatgttagatagtagatctgtttgtttatatatttcattttgacttgtta |
2175602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 522 - 640
Target Start/End: Complemental strand, 2175122 - 2175004
Alignment:
| Q |
522 |
ttggttaaccatttcgatgtatttatttatttttcatcgaaagggtgtannnnnnnatgttaatattttagattaatttcggagatattcatttgggagc |
621 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| ||||||| |||||||||| |
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| T |
2175122 |
ttggttaaccatttggatgtatttatttatttttcatccaaagggtgtatttttttatgttaatattttagattcatttcgaagatatttatttgggagc |
2175023 |
T |
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| Q |
622 |
tactgatgttgattttgat |
640 |
Q |
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||||||| ||||||||||| |
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| T |
2175022 |
tactgatattgattttgat |
2175004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 36900287 - 36900445
Alignment:
| Q |
1 |
atgaaggaacacgtgttgattactatatttgctaatgctggaagtgcttttggatctgggtctccttatgctgttgggattgttaatattattaaagcgt |
100 |
Q |
| |
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||||||||||| || | ||||| |||||||| |||||||| ||| ||||| ||||| || ||||||||||||| ||||| ||||| ||||| |||| |
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| T |
36900287 |
atgaaggaacatgttcttattaccatatttgcaaatgctggggctgcgtttgggtctggttcatcttatgctgttggtattgtgaatatcattaaggcgt |
36900386 |
T |
|
| Q |
101 |
tttatggaaggagtatttcttttcatgctgcttggcttctcattatcaccactcaggtg |
159 |
Q |
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|||||||||||| ||| || |||| |||||| |||||||| ||||| || ||||||||| |
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| T |
36900387 |
tttatggaaggaatatatcgtttcttgctgcatggcttctgattattacgactcaggtg |
36900445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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