View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_10 (Length: 368)
Name: NF6240_low_10
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 44374311 - 44374647
Alignment:
| Q |
18 |
atcctcctccttgtgcactcaaacagtgtccaacgacatttctcaccaaaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggcc |
117 |
Q |
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| T |
44374311 |
atcctcctccttgtgcactcaaacagtgtccaacgacatttctcaccaaaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggcc |
44374410 |
T |
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| Q |
118 |
aagcattccatctacggggtggtaggaagaatctggaaaaatctgatcatatccgcatctgcatagaataaccaaaaaagttgtattatataacatgatt |
217 |
Q |
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| T |
44374411 |
aagcattccatctacggggtggtaggaagaatctggaaaaatctgatcatatccgcatctgcatagaataaccaaaaaagttgtattatataacatgatt |
44374510 |
T |
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| Q |
218 |
tttacttctgaataaaggagtatgtgtatggataatcatcatgcaacaatggt-gnnnnnnngaaacacttgttgcagaaaggctaaatttagcgagaac |
316 |
Q |
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| T |
44374511 |
tttacttctgaataaaggagtatgtgtatggataatcatcatgcaacgatggtattttttttgaaacacttgttgcagaaaggctaaatttagcgagaac |
44374610 |
T |
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| Q |
317 |
atacacataagcatgtatgaggttgtttaacttatga |
353 |
Q |
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| T |
44374611 |
atacacataagcatgtttgaggttgtttaacttatga |
44374647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 53 - 178
Target Start/End: Original strand, 39497425 - 39497550
Alignment:
| Q |
53 |
acatttctcaccaaaccctgaccattcagttgtgatatcaagctggatttgcccctgccaaggccaagcattccatctacggggtggtaggaagaatctg |
152 |
Q |
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| T |
39497425 |
acatttcgcaccaaaccctggctattcagctgtgatatcaagctggcctttccccttccaagaccaagtattccatctaaagggtggtaagttgaaggtg |
39497524 |
T |
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| Q |
153 |
gaaaaatctgatcatatccgcatctg |
178 |
Q |
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| T |
39497525 |
aaaatatctggtcatatccacatctg |
39497550 |
T |
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