View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_14 (Length: 331)
Name: NF6240_low_14
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 52300343 - 52300124
Alignment:
| Q |
10 |
attatactgcaaatttgtctttattatcaatattcaatcaaattttttatcctgttggacattccctctcgttatggctgatccacttacaaaaatcact |
109 |
Q |
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| T |
52300343 |
attatgctgcaaatttgtctttattatcaatattcaatcaaattttttatcctgttggacattccctctcgttatggctgatccacttacaaaaatcact |
52300244 |
T |
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| Q |
110 |
tttctactactacctcttccagcaaatgaagttaattaattaattaattgacagaatattgatgacaggtaggaatccattagaatccacatatatatgt |
209 |
Q |
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| T |
52300243 |
tttctactactacctcttccagcaaatgaagttaattaattaattaattgacagaatattgatgacaggtaggaatccattagaatccacatatatatgt |
52300144 |
T |
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| Q |
210 |
atataagtggatagttaata |
229 |
Q |
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| T |
52300143 |
atataagtggatagttaata |
52300124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 52300137 - 52300079
Alignment:
| Q |
248 |
gtggatagttaataataagcatgcattcttgtaagtaattaccgaaggaaaatgtaatg |
306 |
Q |
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| T |
52300137 |
gtggatagttaataataagcatgcattcttgtaagtaattaccgaaggaaaatgtaatg |
52300079 |
T |
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