View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_17 (Length: 293)
Name: NF6240_low_17
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 36768718 - 36769003
Alignment:
| Q |
1 |
tcatcatcaccattttgcaatttggtgatacaatcacgtggtaatttcaggcgagtcattctgtgcatgttacaggttactggagacccagggaagatgg |
100 |
Q |
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| T |
36768718 |
tcatcatcaccattttgcaatttggtgatacaatcacgtggtaatttcaggcgagtcattctgtgcatgttacaggttactggagacccagggaagatgg |
36768817 |
T |
|
| Q |
101 |
ttgcagtccagagaaatttcggcaagtttggaattaaagaaatagctagaactggaaaggttcgaaagctcaactgagtacctaagaaatttccataact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36768818 |
ttgcagtccagagaaatttcggcaagtttggaattaaagaaatagctagaaccggaaaggttcgaaagctcaactgagtacctaagaaatttccataact |
36768917 |
T |
|
| Q |
201 |
cttttatcttgtccactttctcattcattgcagtgttatttgtaagactctgcatattttactaattcgttataatctgatgatgt |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36768918 |
cttttatcttgtccactttctcattcattgcagtgttatttgtaagactctgcatattttactaattcgttataatctgatgatgt |
36769003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 36776256 - 36776366
Alignment:
| Q |
140 |
aaatagctagaactggaaaggttcgaaagctcaactgagtacctaagaaatttccataactctttt--atcttgtccactttctcattcattgcagtgtt |
237 |
Q |
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|||||| ||||||| |||||||| ||||||| || ||| ||| |||||| ||||| || ||||||| |||||||||||||||| ||| || | |||||| |
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| T |
36776256 |
aaatagttagaacttgaaaggtt-gaaagctaaattgaatacgtaagaagtttccttagctcttttttatcttgtccactttcttattaatcgtagtgtt |
36776354 |
T |
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| Q |
238 |
atttgtaagact |
249 |
Q |
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|||||||||||| |
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| T |
36776355 |
atttgtaagact |
36776366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 21835680 - 21835786
Alignment:
| Q |
82 |
ggagacccagggaagatggttgcagtccagagaaatttcggcaagtttggaattaaagaaatagctagaactggaaaggttcgaaagctcaactgagtac |
181 |
Q |
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||||| ||||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
21835680 |
ggagatccaggaaagatggttgcagttcaaagaaatttaagcaagtttggaattaaagaaatagctagaactggaaagattccaaagctcatttgagtac |
21835779 |
T |
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| Q |
182 |
ctaagaa |
188 |
Q |
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||||||| |
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| T |
21835780 |
ctaagaa |
21835786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 6411739 - 6411668
Alignment:
| Q |
122 |
gcaagtttggaattaaagaaatagctagaactggaaaggttcgaaagctcaactgagtacctaagaaatttc |
193 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||| ||||||||| | ||||| |||||||||| |
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| T |
6411739 |
gcaagtttggaattaaagaaatagctagaactagaaatgttccaaagctcaatttagtacagaagaaatttc |
6411668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 188
Target Start/End: Complemental strand, 392472 - 392409
Alignment:
| Q |
124 |
aagtttggaattaaagaaatagctagaactggaaaggttcgaaagctcaactgagtacctaagaa |
188 |
Q |
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||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| |
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| T |
392472 |
aagtttgaaattaaagaaatagctagaa-tggaaaggttccaaagcacaactgagtgcctaagaa |
392409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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