View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6240_low_19 (Length: 256)
Name: NF6240_low_19
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 17366146 - 17366374
Alignment:
| Q |
11 |
caaaggctgagaatggtggcaacccataacacaatcataaatctctccattccaacatttgtcctctttgcacgtgtactccctctggtcctccatataa |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
17366146 |
caaaggctgagaatggcggcaacccataacacaatcttaaatctctccattccaacatctgtcctctttacacatgtactccctctggtcctccatataa |
17366245 |
T |
|
| Q |
111 |
gaaggnnnnnnnn-cagcttaacaatacaaactaaattccatgaatactcatgaaca---tagtaattaaaattagacatcttagaatacacccactacc |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17366246 |
gaagaaaaaaaaaacagcttaacaatacaaactaaattccatgaatactcacgaacaacatagtaattaaaattagacatcttagaatacacccactacc |
17366345 |
T |
|
| Q |
207 |
tacttctttcaattttccatgttctcgac |
235 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
17366346 |
tacttctttcaattttccatgttctcgac |
17366374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 42182516 - 42182572
Alignment:
| Q |
11 |
caaaggctgagaatggtggcaacccataacacaatcataaatctctccattccaaca |
67 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42182516 |
caaaggccgagaatggcggcaacccataacacaatcataaatctctccattccaaca |
42182572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University