View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6240_low_21 (Length: 248)
Name: NF6240_low_21
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_21 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 50667912 - 50667680
Alignment:
| Q |
16 |
gttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaaacttgta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50667912 |
gttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaaacttgta |
50667813 |
T |
|
| Q |
116 |
tgccttataactcctccaaattcatctacgccttcaatattaggcacaacagcttcggcattctcaccggtcgctacgatcaaccaacgacaaatatatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50667812 |
tgccttataactcctccaaattcatctacgccttcaatattaggcacaacagcttcggcattctcaccggtcgctacgatcaaccaacgacaaacatatt |
50667713 |
T |
|
| Q |
216 |
ctgttgttacatcagctttactattaaaactct |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50667712 |
ctgttgttacatcagctttactattaaaactct |
50667680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 888411 - 888595
Alignment:
| Q |
17 |
ttacaaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaaacttgtat |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
888411 |
ttacaaagatccaaacaaacttccatacctgaatttccacatccaacaaccaaaactttcttccctctaaactcttcaccacttttatacaaactagtat |
888510 |
T |
|
| Q |
117 |
gccttataactcctccaaattcatctacgccttcaatattaggcacaacagcttcggcattctcaccggtcgctacgatcaacca |
201 |
Q |
| |
|
|||| ||| || |||| ||||| || |||||||| | || ||||| || || |||||||| ||||| || ||||||||||| |
|
|
| T |
888511 |
gcctaatactaccaacaaactcatcaactccttcaatctcgggtacaaccgcctcagcattctctccggttgcaacgatcaacca |
888595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 29857478 - 29857545
Alignment:
| Q |
20 |
caaagatctaaacaaacttccataccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
87 |
Q |
| |
|
|||||||| | | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29857478 |
caaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaa |
29857545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University