View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6240_low_22 (Length: 246)

Name: NF6240_low_22
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6240_low_22
NF6240_low_22
[»] chr4 (9 HSPs)
chr4 (7-246)||(17212570-17212809)
chr4 (56-246)||(9651562-9651752)
chr4 (103-184)||(16224852-16224933)
chr4 (106-188)||(14570644-14570726)
chr4 (11-56)||(36173103-36173148)
chr4 (11-56)||(46815322-46815367)
chr4 (11-56)||(49261600-49261645)
chr4 (16-56)||(33163211-33163251)
chr4 (11-54)||(3394649-3394692)
[»] chr6 (6 HSPs)
chr6 (77-244)||(16375594-16375761)
chr6 (118-165)||(15861830-15861877)
chr6 (118-165)||(1650953-1651000)
chr6 (118-165)||(1658712-1658759)
chr6 (102-165)||(27740185-27740248)
chr6 (7-56)||(23912051-23912103)
[»] scaffold0205 (1 HSPs)
scaffold0205 (103-246)||(7281-7424)
[»] chr2 (4 HSPs)
chr2 (103-232)||(23166686-23166813)
chr2 (103-232)||(23577943-23578070)
chr2 (11-56)||(22494635-22494680)
chr2 (118-175)||(25266254-25266311)
[»] chr1 (8 HSPs)
chr1 (103-229)||(4284922-4285048)
chr1 (15-56)||(50067043-50067084)
chr1 (11-52)||(5766640-5766681)
chr1 (11-56)||(45690425-45690470)
chr1 (7-54)||(5767416-5767464)
chr1 (118-165)||(45050790-45050837)
chr1 (7-56)||(27034270-27034320)
chr1 (19-56)||(23602780-23602817)
[»] chr8 (6 HSPs)
chr8 (109-188)||(23243745-23243824)
chr8 (11-56)||(43636561-43636606)
chr8 (11-53)||(43835142-43835184)
chr8 (118-165)||(24548330-24548377)
chr8 (23-56)||(33775452-33775485)
chr8 (20-56)||(3964217-3964253)
[»] chr7 (7 HSPs)
chr7 (56-187)||(19066877-19067008)
chr7 (106-195)||(16369139-16369228)
chr7 (11-53)||(20377879-20377921)
chr7 (7-52)||(21613249-21613295)
chr7 (11-56)||(26500961-26501005)
chr7 (11-56)||(26591708-26591752)
chr7 (11-56)||(48219658-48219703)
[»] chr3 (7 HSPs)
chr3 (103-237)||(14970162-14970295)
chr3 (11-56)||(53825813-53825858)
chr3 (7-56)||(6463220-6463269)
chr3 (11-56)||(6755533-6755578)
chr3 (7-56)||(25886256-25886306)
chr3 (118-165)||(15575151-15575198)
chr3 (17-56)||(42948981-42949020)
[»] chr5 (8 HSPs)
chr5 (11-56)||(19401717-19401762)
chr5 (7-54)||(9883720-9883768)
chr5 (12-56)||(40014161-40014205)
chr5 (11-56)||(3460108-3460153)
chr5 (11-56)||(4845478-4845523)
chr5 (97-165)||(23985304-23985372)
chr5 (118-165)||(34938623-34938670)
chr5 (27-56)||(10399111-10399140)
[»] scaffold1700 (1 HSPs)
scaffold1700 (7-56)||(940-990)
[»] scaffold0005 (1 HSPs)
scaffold0005 (106-188)||(246650-246732)
[»] scaffold0162 (1 HSPs)
scaffold0162 (118-165)||(9039-9086)
[»] scaffold0125 (1 HSPs)
scaffold0125 (118-163)||(34857-34902)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 17212570 - 17212809
Alignment:
Q  7 cataggggggagagtgaggaggagagtgagaatgtgagatggtgtgaggacgtcgatttttccaaaacttgttttcctcgaggaaatgaagtagaattaa 106  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17212570 cataggggggagagtgaggaggagaatgagaatgtgagatggtgtgaggacgtcgatttttccaaaacttgttttcctcaaggaaatgaagtagaattaa 17212669  T
Q  107 ggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttctttcaaaaaagtga 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  17212670 ggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgctttgaaaatggacttctttcgaaaaagtga 17212769  T
Q  207 taaagagagacgaagtttgtgattttcatgattttgtcgt 246  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  17212770 taaagagagacgaactttgtgattttcatgattttgtcgt 17212809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 9651752 - 9651562
Alignment:
Q  56 acgtcgatttttccaaaacttgttttcctcgaggaaatgaagtagaattaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttca 155  Q
    |||||||||||||| ||||| ||||| ||| | | || |  ||||  |||||||||| || | | || |||||||||||||||||| || | || |||||    
T  9651752 acgtcgatttttccgaaactcgtttttctcaaaggaaaggggtagggttaaggttgtttattcaatacatgatttctaaaaatggttgtgagtgttttca 9651653  T
Q  156 ttgagttttaacttattttgcgttgaaaatggacttctttcaaaaaagtgataaagagagacgaagtttgtgattttcatgattttgtcgt 246  Q
     ||||| ||||||| |||||| ||||||||  | ||||||   |||| ||||||||| ||||||| ||||||||||| ||||||| |||||    
T  9651652 atgagtcttaacttgttttgctttgaaaataaaattctttttgaaaaatgataaagatagacgaactttgtgatttttatgatttcgtcgt 9651562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 16224933 - 16224852
Alignment:
Q  103 ttaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaa 184  Q
    ||||||||||||||| ||| ||||||||||||| ||||| || |||| ||||||||||||||||||  |||||| |||||||    
T  16224933 ttaaggttgtatactaattttatgatttctaaagatggttgtgattgatttcattgagttttaactagttttgctttgaaaa 16224852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 14570726 - 14570644
Alignment:
Q  106 aggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatgga 188  Q
    |||||||||| || |||||||||||||||||||||| |  ||||||||  || |||||||| | ||||||| |||||||||||    
T  14570726 aggttgtataatgtttatatgatttctaaaaatggttgagattggttttgttaagttttaaatgattttgctttgaaaatgga 14570644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 36173103 - 36173148
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||    
T  36173103 ggggagagagtgaggaggagagtgggaatgtgagatggtgtgagga 36173148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 46815367 - 46815322
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||    
T  46815367 ggggagagagtgaggaggagagtgagaatgtgagttggtgtgagga 46815322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 49261600 - 49261645
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  49261600 ggggagagagtgaggaggagagtgagaatgtgagatgatgtgagga 49261645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 33163251 - 33163211
Alignment:
Q  16 gagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  33163251 gagagtgaggaggagagtgaaaatgtgagttggtgtgagga 33163211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 3394649 - 3394692
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgag 54  Q
    |||| ||||||||||||||||| | |||||||||||||||||||    
T  3394649 ggggagagagtgaggaggagagagggaatgtgagatggtgtgag 3394692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 16375761 - 16375594
Alignment:
Q  77 gttttcctcgaggaaatgaagtagaattaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgc 176  Q
    ||||| ||| |||||||  |||||  ||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||  ||||||    
T  16375761 gtttttctcaaggaaattgagtagggttaaggttgtatactgattatatgatttctaaaaatggttgtgattgatttcattgagttttaactcgttttgc 16375662  T
Q  177 gttgaaaatggacttctttcaaaaaagtgataaagagagacgaagtttgtgattttcatgattttgtc 244  Q
     |||||||| || ||||||   |||||||||||||||||||||| |||||||||||||||||||||||    
T  16375661 tttgaaaatagaattcttttggaaaagtgataaagagagacgaactttgtgattttcatgattttgtc 16375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 15861877 - 15861830
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  15861877 gattatatgattactaaaaatggtagtgattggtttccttgagtttta 15861830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 1650953 - 1651000
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  1650953 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 1651000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 1658712 - 1658759
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  1658712 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 1658759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 27740248 - 27740185
Alignment:
Q  102 attaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||| |||||  |||||||||||| || ||||||||||| ||||||||| |||| |||||    
T  27740248 attaaggtagtatagagattatatgattactgaaaatggtagtgattggtttccttgaatttta 27740185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 23912051 - 23912103
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgaga--atgtgagatggtgtgagga 56  Q
    ||||||||| |||||||||||| |||||||||  |||||||||||||||||||    
T  23912051 catagggggagagagtgaggagtagagtgagagaatgtgagatggtgtgagga 23912103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 103 - 246
Target Start/End: Complemental strand, 7424 - 7281
Alignment:
Q  103 ttaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttctttcaaaaaa 202  Q
    |||||||||||||||  || |||||||||||||||||||  | | |||||||||||||||||||||| |||||  ||||||||||| | ||||   ||||    
T  7424 ttaaggttgtatactagttttatgatttctaaaaatggttatgaatggtttcattgagttttaacttgttttgatttgaaaatggaatccttttggaaaa 7325  T
Q  203 gtgataaagagagacgaagtttgtgattttcatgattttgtcgt 246  Q
    |||||||||||||||||| ||||||||||| ||||||| |||||    
T  7324 gtgataaagagagacgaattttgtgattttgatgatttggtcgt 7281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 23166686 - 23166813
Alignment:
Q  103 ttaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttctttcaaaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||| || | || ||||| ||||||||||||| |||||| ||||||||||  ||||||   ||||    
T  23166686 ttaaggttgtatactgattatatgatttctaaaaatggttgtgagtgttttcaatgagttttaacttgttttgctttgaaaatggcattctttgtgaaaa 23166785  T
Q  203 gtgataaagagagacgaagtttgtgatttt 232  Q
     ||||  ||||||||||| |||||||||||    
T  23166786 atgat--agagagacgaactttgtgatttt 23166813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 23577943 - 23578070
Alignment:
Q  103 ttaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttctttcaaaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||| || | || ||||| ||||||||||||| |||||| ||||||||||  ||||||   ||||    
T  23577943 ttaaggttgtatactgattatatgatttctaaaaatggttgtgagtgttttcaatgagttttaacttgttttgctttgaaaatggcattctttgtgaaaa 23578042  T
Q  203 gtgataaagagagacgaagtttgtgatttt 232  Q
     ||||  ||||||||||| |||||||||||    
T  23578043 atgat--agagagacgaactttgtgatttt 23578070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 22494635 - 22494680
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  22494635 ggggggagagtgaggaggagagtgagaatgtgagttggtgtgagga 22494680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 25266254 - 25266311
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttg 175  Q
    |||||||||||| || ||||||||||| ||||||||| ||||| ||||| | ||||||    
T  25266254 gattatatgattactgaaaatggtagtgattggtttccttgagctttaattgattttg 25266311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 4285048 - 4284922
Alignment:
Q  103 ttaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttctttcaaaaaa 202  Q
    |||||||||| || | | ||||||||||||||||||||| || | | |||||||||||||||||||| | |||| ||||||||||| ||||||   ||||    
T  4285048 ttaaggttgtttattcaatatatgatttctaaaaatggtggtgaatagtttcattgagttttaacttgtgttgctttgaaaatggaattcttttggaaaa 4284949  T
Q  203 gtgataaagagagacgaagtttgtgat 229  Q
     ||||||||||||||||| ||||||||    
T  4284948 ttgataaagagagacgaactttgtgat 4284922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 50067084 - 50067043
Alignment:
Q  15 ggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50067084 ggagagtgaggaggagagtgagaatgtgagatggtgtgagga 50067043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 5766640 - 5766681
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtg 52  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  5766640 gggggaagagtgaggaggagagtgagaatgtgagatggtgtg 5766681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 45690425 - 45690470
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  45690425 ggggagagagtgaggaggagagtgagaatgtgagatgatgtgagga 45690470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 5767416 - 5767464
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgagaatgtgagatggtgtgag 54  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  5767416 catagggggagagagtcaggaggagagtgagaatgtgagatggtgtgag 5767464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 45050837 - 45050790
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  45050837 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 45050790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 27034320 - 27034270
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||| ||||||||||||||||||| |||||  ||||||||||||||    
T  27034320 catagggggagagagtgaggaggagagtgggaatggaagatggtgtgagga 27034270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 23602780 - 23602817
Alignment:
Q  19 agtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  23602780 agtgaggaggagagtgagaatatgaaatggtgtgagga 23602817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 23243745 - 23243824
Alignment:
Q  109 ttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatgga 188  Q
    ||||||||| ||||||||||||| ||||||||| || ||||||||||||||||| |||||| |||||| |||||||||||    
T  23243745 ttgtatacttattatatgatttccaaaaatggttgtgattggtttcattgagttctaacttgttttgctttgaaaatgga 23243824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 43636606 - 43636561
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  43636606 ggggagagagtgaggaggagagtgagaatgtgagatggtgtgagga 43636561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 43835142 - 43835184
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtga 53  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  43835142 ggggggagagtgaggaggagagtgagaatgttagatggtgtga 43835184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 24548377 - 24548330
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  24548377 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 24548330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 33775485 - 33775452
Alignment:
Q  23 aggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||||||||||||||||||||| |||||||||||    
T  33775485 aggaggagagtgagaatgtgagttggtgtgagga 33775452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 3964253 - 3964217
Alignment:
Q  20 gtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| |||||| |||||||||||||||||||||||||    
T  3964253 gtgatgaggagggtgagaatgtgagatggtgtgagga 3964217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 19067008 - 19066877
Alignment:
Q  56 acgtcgatttttccaaaacttgttttcctcgaggaaatgaagtagaattaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttca 155  Q
    |||||||||||||| |||||  |||| |||||||||| |  ||||  ||||||||||||||||||||| ||||||||||||||| | || |||| ||| |    
T  19067008 acgtcgatttttccgaaactcatttttctcgaggaaaaggggtagggttaaggttgtatactgattatttgatttctaaaaatgtttgtgattgctttta 19066909  T
Q  156 ttgagttttaacttattttgcgttgaaaatgg 187  Q
     |||||||||||||  ||||| | ||||||||    
T  19066908 atgagttttaactttatttgcttggaaaatgg 19066877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 16369139 - 16369228
Alignment:
Q  106 aggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttcttt 195  Q
    |||||||||| || |||||||||||||||||||||  | | |||||||  ||||||||||| | ||||||| ||||||||||| ||||||    
T  16369139 aggttgtataatgtttatatgatttctaaaaatggctgaagttggtttttttgagttttaaatgattttgctttgaaaatggaattcttt 16369228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 20377921 - 20377879
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtga 53  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  20377921 ggggagagagtgaggaggagagtgagaatgtgagatggtgtga 20377879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 21613295 - 21613249
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgagaatgtgagatggtgtg 52  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  21613295 catagggggagagagtgaggaagagagtgagaatgtgagatggtgtg 21613249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 26500961 - 26501005
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  26500961 ggggagagagtgaggaggagagtgagaatgtgagat-gtgtgagga 26501005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 26591752 - 26591708
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
T  26591752 ggggagagagtgaggaggagagtgagaatgtgagat-gtgtgagga 26591708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 48219703 - 48219658
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| |||| |||||||||||||||||||| |||||||||||||||    
T  48219703 ggggagagactgaggaggagagtgagaatgcgagatggtgtgagga 48219658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 14970295 - 14970162
Alignment:
Q  103 ttaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatggacttctttcaaaaaa 202  Q
    ||||||||| ||| ||||| ||||||||||||||||||| ||  ||| || |||| ||||||||||| |||||| ||||||||||  ||| |   |||||    
T  14970295 ttaaggttgcataatgattttatgatttctaaaaatggttgtggttgattccattaagttttaacttgttttgctttgaaaatggcattcctgtgaaaaa 14970196  T
Q  203 gtgataaagagagacgaagtttgtgattttcatga 237  Q
     || |||||||||||||| ||||||||||| ||||    
T  14970195 -tgttaaagagagacgaactttgtgatttttatga 14970162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 53825858 - 53825813
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  53825858 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 53825813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 6463269 - 6463220
Alignment:
Q  7 cataggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||||||| || |||||||| |||||||||||||||||||||||||||||    
T  6463269 cataggggagacagtgaggatgagagtgagaatgtgagatggtgtgagga 6463220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 6755533 - 6755578
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||    
T  6755533 ggggggagagtgaggatgagagtgagaatatgagatggtgtgagga 6755578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 25886306 - 25886256
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  25886306 catagggggagagaatgaggaggagagtgagagtgtgagatggtgtgagga 25886256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 15575198 - 15575151
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  15575198 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 15575151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 42949020 - 42948981
Alignment:
Q  17 agagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  42949020 agagtgaggaggagggtgagaatatgagatggtgtgagga 42948981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 19401717 - 19401762
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19401717 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 19401762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 9883720 - 9883768
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgagaatgtgagatggtgtgag 54  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  9883720 catagggggagatagtgaggaggagagtgagaatgtgagatggtgtgag 9883768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Original strand, 40014161 - 40014205
Alignment:
Q  12 gggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||    
T  40014161 gggggggagtgaggaggagagtgagaatgtgagttggtgtgagga 40014205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 3460108 - 3460153
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| ||||||| ||||||||||||||||||||| |||||||||||    
T  3460108 ggggagagagtggggaggagagtgagaatgtgagttggtgtgagga 3460153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 4845478 - 4845523
Alignment:
Q  11 ggggggagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    |||| ||||||||||||||||||||||||||||| ||||| |||||    
T  4845478 ggggagagagtgaggaggagagtgagaatgtgagttggtgcgagga 4845523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 23985304 - 23985372
Alignment:
Q  97 gtagaattaaggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||| |||||| | |||||  |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  23985304 gtaggattaagatagtatagagattatatgattactgaaaatggtagtgattggtttccttgagtttta 23985372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 34938670 - 34938623
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  34938670 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 34938623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 10399111 - 10399140
Alignment:
Q  27 ggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||||||||||||||||||||||||    
T  10399111 ggagagtgagaatgtgagatggtgtgagga 10399140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 940 - 990
Alignment:
Q  7 cataggggg-gagagtgaggaggagagtgagaatgtgagatggtgtgagga 56  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  940 catagggggagagagtgaggaggagagtgagaatgtgagatgttgtgagga 990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 188
Target Start/End: Original strand, 246650 - 246732
Alignment:
Q  106 aggttgtatactgattatatgatttctaaaaatggtagtaattggtttcattgagttttaacttattttgcgttgaaaatgga 188  Q
    |||||||||| || |||||||||||||||||||||| |  ||||||||  || |||||||| | ||||||| |||||||||||    
T  246650 aggttgtataatgtttatatgatttctaaaaatggttgagattggttttgttaagttttaaatgattttgctttgaaaatgga 246732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 9039 - 9086
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagtttta 165  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||||    
T  9039 gattatatgattactgaaaatggtagtgattggtttccttgagtttta 9086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 34902 - 34857
Alignment:
Q  118 gattatatgatttctaaaaatggtagtaattggtttcattgagttt 163  Q
    |||||||||||| || ||||||||||| ||||||||| ||||||||    
T  34902 gattatatgattactgaaaatggtagtgattggtttccttgagttt 34857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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