View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_24 (Length: 239)
Name: NF6240_low_24
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_24 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0470 (1 HSPs) |
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| [»] scaffold0514 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 6805348 - 6805584
Alignment:
| Q |
7 |
ctatgattaacttttgtagtgtttataaggtacaagcatttagcaataataaccatacatccatgatattttatgtgcaattaatattgaattaacccga |
106 |
Q |
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| T |
6805348 |
ctatgattaacttttgtagtgtttataaggtacaagtatttagcaataataaccatacattcatgatattttatgtacaattaatattgaattaacccga |
6805447 |
T |
|
| Q |
107 |
gtctgcatgtgttgagagttaatcttgcaaaactcatgattggatatgcatatgttgagtctgcatgtgttaaacttcctgcacatccttaaagaaacaa |
206 |
Q |
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| T |
6805448 |
gtctgcatgtgttgagatttaatcttgcaaaactcatgattggatatgcatatgttgagtctgcatgtgttaaacttcctgcacacccttgaagaaacaa |
6805547 |
T |
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| Q |
207 |
c----atagtgacaaaaagatgactgacagactcaat |
239 |
Q |
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| T |
6805548 |
catatatagtgacaaaaagatgactgacagactcaat |
6805584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 6618732 - 6618835
Alignment:
| Q |
11 |
gattaacttttgtagtgtttataaggtacaagcatttagcaataataaccatacatccatgatattttatgtgcaattaatattgaattaacccgagtct |
110 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||| ||| | |
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| T |
6618732 |
gattaacttttgtagtgtttataagatacaagcatttagcaataataaccatacattcatgatattttatgtacagttaatattgcattaaccctagtat |
6618831 |
T |
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| Q |
111 |
gcat |
114 |
Q |
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|||| |
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| T |
6618832 |
gcat |
6618835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 6593028 - 6593132
Alignment:
| Q |
11 |
gattaacttttgtagtgtttataaggtacaagcatttagcaa-taataaccatacatccatgatattttatgtgcaattaatattgaattaacccgagtc |
109 |
Q |
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| T |
6593028 |
gattaacttttgtagtgtttataagatacaagcatttagcaaataataaccatacattcatgatattttatgtacagttaatattgcattaaccctagtg |
6593127 |
T |
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| Q |
110 |
tgcat |
114 |
Q |
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||||| |
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| T |
6593128 |
tgcat |
6593132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 6792630 - 6792737
Alignment:
| Q |
11 |
gattaacttttgtagtgtttataaggtacaagcatttagcaataataacc----atacatccatgatattttatgtgcaattaatattgaattaacccga |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||| |||||||| | |
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| T |
6792630 |
gattaacttttgtagtgtttataagatacaagcatttagcaataataaccatatatacattcatgatattttatgtacagttaatattacattaacccta |
6792729 |
T |
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| Q |
107 |
gtctgcat |
114 |
Q |
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|||||||| |
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| T |
6792730 |
gtctgcat |
6792737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0470 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0470
Description:
Target: scaffold0470; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 8045 - 8150
Alignment:
| Q |
6 |
actatgattaacttttgtagtgtttataaggtacaagcatttagcaataataaccatacatccatgatattttatgtgcaattaatattgaattaacccg |
105 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||| |
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| T |
8045 |
actacgattaacttttgtagtgtttataagatacaagcatttagcaataataaccatacattcatgatattttatgtacagttaatattgcattaaccct |
8144 |
T |
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| Q |
106 |
agtctg |
111 |
Q |
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|||||| |
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| T |
8145 |
agtctg |
8150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0514 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0514
Description:
Target: scaffold0514; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 3993 - 3886
Alignment:
| Q |
11 |
gattaacttttgtagtgtttataaggtacaagcatttagcaataataacc----atacatccatgatattttatgtgcaattaatattgaattaacccga |
106 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||| |||||||| | |
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| T |
3993 |
gattaacttttgtagtgtttataagatacaagcatttagcaataataaccatatatacattcatgatattttatgtacagttaatattacattaacccta |
3894 |
T |
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| Q |
107 |
gtctgcat |
114 |
Q |
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|||||||| |
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| T |
3893 |
gtctgcat |
3886 |
T |
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