View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_25 (Length: 238)
Name: NF6240_low_25
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 8360682 - 8360458
Alignment:
| Q |
1 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttctcaaatttcaagtgattatgcagcatattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8360682 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttctcaaatttcaagtgattatgcagcatattg |
8360583 |
T |
|
| Q |
101 |
cttcacgccggttggtgcttgaaggagggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatggagagggaggacacactcaaggctaatta |
200 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8360582 |
cttcacgccggttggtgcttgaagaagggtgggagttcgtgcagtgaaagaaataattgagcttagtgatgga----gaggacacactcaaggctaatta |
8360487 |
T |
|
| Q |
201 |
aattaaactgtttaactaaattgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||| |||| |
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| T |
8360486 |
aattaaactgtttaactaaattgaggatg |
8360458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 38412279 - 38412154
Alignment:
| Q |
100 |
gcttcacgccggttggtgcttgaaggagggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatggagagggaggacacactcaaggctaatt |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38412279 |
gcttcacgccggttggtgcttgaaggaaggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatgga----gaggacacactcaaggctaatt |
38412184 |
T |
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| Q |
200 |
aaattaaactgtttaactaaattgatgatg |
229 |
Q |
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|||||||||| |||||||||||||| |||| |
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| T |
38412183 |
aaattaaactatttaactaaattgaggatg |
38412154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38412344 - 38412275
Alignment:
| Q |
1 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttc |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38412344 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttc |
38412275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 26908596 - 26908471
Alignment:
| Q |
100 |
gcttcacgccggttggtgcttgaaggagggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatggagagggaggacacactcaaggctaatt |
199 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26908596 |
gcttcacgccggttggtgcttgaaggaaggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatgga----gaggacacactcaaggctaatt |
26908501 |
T |
|
| Q |
200 |
aaattaaactgtttaactaaattgatgatg |
229 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |
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| T |
26908500 |
aaattaaactatttaactaaattgaggatg |
26908471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26908661 - 26908592
Alignment:
| Q |
1 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttc |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26908661 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttc |
26908592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 34612367 - 34612492
Alignment:
| Q |
100 |
gcttcacgccggttggtgcttgaaggagggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatggagagggaggacacactcaaggctaatt |
199 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34612367 |
gcttcacgccggttggtgcttgaaggaaggtgagagttcgtgcagtgaaagaaagaattgagcttagtgatgga----gaggacacactcaaggctaatt |
34612462 |
T |
|
| Q |
200 |
aaattaaactgtttaactaaattgatgatg |
229 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |
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|
| T |
34612463 |
aaattaaactatttaactaaattgaggatg |
34612492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 34612302 - 34612371
Alignment:
| Q |
1 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttc |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34612302 |
ctctaagtttggtggttaagtcattgtatcactatcaagggcttcttctctttttacatccataagcttc |
34612371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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