View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6240_low_3 (Length: 542)

Name: NF6240_low_3
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6240_low_3
NF6240_low_3
[»] chr2 (8 HSPs)
chr2 (38-359)||(15675687-15676019)
chr2 (415-532)||(15650112-15650232)
chr2 (279-372)||(17841688-17841786)
chr2 (155-285)||(4622773-4622903)
chr2 (312-373)||(12698867-12698928)
chr2 (279-359)||(4622654-4622739)
chr2 (100-138)||(4622931-4622969)
chr2 (230-285)||(17841821-17841876)
[»] chr4 (11 HSPs)
chr4 (155-359)||(221389-221597)
chr4 (279-372)||(46394976-46395072)
chr4 (230-285)||(1143410-1143465)
chr4 (279-359)||(1143290-1143375)
chr4 (231-284)||(18906331-18906384)
chr4 (231-285)||(46395107-46395161)
chr4 (316-359)||(34442390-34442433)
chr4 (279-359)||(52597016-52597105)
chr4 (157-197)||(52597218-52597258)
chr4 (155-205)||(46395194-46395244)
chr4 (96-140)||(46395270-46395314)
[»] chr5 (11 HSPs)
chr5 (155-282)||(16855532-16855659)
chr5 (279-359)||(15921401-15921486)
chr5 (157-372)||(26502934-26503165)
chr5 (279-359)||(16855678-16855764)
chr5 (279-359)||(28247111-28247194)
chr5 (283-359)||(32903656-32903737)
chr5 (231-285)||(15921522-15921576)
chr5 (231-285)||(28247229-28247283)
chr5 (157-203)||(28247320-28247366)
chr5 (231-295)||(28084403-28084467)
chr5 (230-281)||(32903561-32903613)
[»] chr6 (4 HSPs)
chr6 (282-372)||(4333979-4334074)
chr6 (279-359)||(32923246-32923330)
chr6 (155-285)||(4334110-4334240)
chr6 (252-285)||(32923365-32923398)
[»] chr8 (5 HSPs)
chr8 (283-372)||(41137786-41137880)
chr8 (279-359)||(6801259-6801344)
chr8 (230-295)||(33359141-33359207)
chr8 (279-330)||(33359232-33359288)
chr8 (233-271)||(41137713-41137750)
[»] chr7 (12 HSPs)
chr7 (279-359)||(778657-778742)
chr7 (150-295)||(45885440-45885586)
chr7 (279-359)||(43127108-43127191)
chr7 (230-275)||(38032401-38032446)
chr7 (230-285)||(778777-778832)
chr7 (150-207)||(38032480-38032537)
chr7 (230-285)||(21859453-21859508)
chr7 (244-285)||(2455884-2455925)
chr7 (282-359)||(21859335-21859417)
chr7 (320-373)||(38032230-38032283)
chr7 (250-295)||(41349973-41350018)
chr7 (100-140)||(21237109-21237149)
[»] chr1 (13 HSPs)
chr1 (279-359)||(51004110-51004195)
chr1 (282-359)||(16543851-16543933)
chr1 (312-359)||(17145309-17145356)
chr1 (230-285)||(51004230-51004285)
chr1 (279-372)||(3303248-3303344)
chr1 (155-269)||(17145366-17145479)
chr1 (238-295)||(17586450-17586507)
chr1 (157-205)||(3303464-3303512)
chr1 (244-275)||(12417339-12417370)
chr1 (230-280)||(18524101-18524152)
chr1 (231-285)||(16543971-16544025)
chr1 (230-285)||(3303379-3303432)
chr1 (250-282)||(9116556-9116588)
[»] chr3 (10 HSPs)
chr3 (158-285)||(3858343-3858471)
chr3 (282-373)||(44791190-44791286)
chr3 (279-359)||(3858223-3858308)
chr3 (279-359)||(26041842-26041925)
chr3 (283-359)||(29808238-29808319)
chr3 (234-275)||(26041759-26041800)
chr3 (147-205)||(44791009-44791067)
chr3 (244-285)||(34296774-34296815)
chr3 (230-285)||(44791096-44791152)
chr3 (253-285)||(52689127-52689159)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 38 - 359
Target Start/End: Original strand, 15675687 - 15676019
Alignment:
Q  38 acaaccaaaagaaaactatcgcaacatcaatacaaactagggatgtcaatgtgtatgaataatatgatacccgtcaccgtcccattggataaatatgata 137  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||    
T  15675687 acaaccaaaagaaaactatcacaacatcaatacaaactagggatgtcaatgggtatggataatatgatacccgtcaccgccctattggataaatatgata 15675786  T
Q  138 cccatatct-----------tcatggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnn 226  Q
    ||| || |            |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||        
T  15675787 cccgtacccgccccgtaccctcatgggcacccactatgcgggtacccgcgggtattgaggtatctatggatatccatggatttttgaatttatttatttt 15675886  T
Q  227 nnngtacaaataataactttttctaattaccaaaaaacttcaacttttagacatccatagaaaattcatgattcttatataatccatatgttttatgatg 326  Q
       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15675887 tttgtacaaataataactttttttaattaccaaaaaacttcaacttttagacatccatagaaaattcatgattcttatataatccatatgttttatgatg 15675986  T
Q  327 tgaatgaagtggaaatggtgaacttaataagat 359  Q
    |||||||||||||||||||||||||||||||||    
T  15675987 tgaatgaagtggaaatggtgaacttaataagat 15676019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 415 - 532
Target Start/End: Original strand, 15650112 - 15650232
Alignment:
Q  415 aactgacaaattaact-tggaagacttgttagattaattttgtnnnnnnntaaaatatagtgtttgattgttaaagacccttggagacaaattactccaa 513  Q
    |||||||| ||||||  ||||||||||||||||||||||||||       ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  15650112 aactgacagattaacaatggaagacttgttagattaattttgtaaaaagataaaataaagtgtttgattgttaaagccccttggagacaaattactccaa 15650211  T
Q  514 --ggggcaaggatcacctatg 532  Q
      |||||||||| ||||||||    
T  15650212 ggggggcaaggaccacctatg 15650232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 17841786 - 17841688
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 372  Q
    ||||||| ||||||||||||||||| ||||||||||     ||||||||||||||||| |||||||||||||||||||||||||||  |||||| ||||    
T  17841786 atccatataaaattcatgattcttacataatccataggatatgttttatgatgtgaataaagtggaaatggtgaacttaataagatgaattaaaaaaat 17841688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 4622903 - 4622773
Alignment:
Q  155 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataac-tttttctaat 253  Q
    |||||||||| ||||| ||| ||||||||||||||  |||| |||  |||||||||| ||||| ||||       |||||||||||||| ||||| ||||    
T  4622903 acccactatgtgggtatccgtgggtattgaggtattcatgg-tatcaatggatttttgaatttatttattttttagtacaaataataacttttttttaat 4622805  T
Q  254 taccaaaaaacttcaacttttagacatccata 285  Q
    || ||||| ||||||||||||| |||| ||||    
T  4622804 tatcaaaagacttcaacttttaaacattcata 4622773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 12698928 - 12698867
Alignment:
Q  312 atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaata 373  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||||||  |||||| |||||    
T  12698928 atatgctttatgatgtgaatgaagtggaaacggtaaacttaataagatgaattaaaaaaata 12698867  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 4622739 - 4622654
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||| |||||||||||||||  |||||||||     ||||||||||| |||| ||| || ||| |||||||||||||||||    
T  4622739 atccatagataattcatgattcttacctaatccatagaatatgttttatgatttgaacgaaatgaaaacggtgaacttaataagat 4622654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 138
Target Start/End: Complemental strand, 4622969 - 4622931
Alignment:
Q  100 tatgatacccgtcaccgtcccattggataaatatgatac 138  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  4622969 tatgatacccgtctccgccccattggataaatatgatac 4622931  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 17841876 - 17841821
Alignment:
Q  230 gtacaaataataactttttct-aattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||||||||||||||||| | |||| ||||||| |||||||||||| |||||||||    
T  17841876 gtacaaataataacttttttttaattgccaaaaa-cttcaacttttaaacatccata 17841821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 155 - 359
Target Start/End: Complemental strand, 221597 - 221389
Alignment:
Q  155 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttctaatt 254  Q
    |||||||||||||||||||| ||||||||||| ||| |||| ||  ||||||||||| ||||| ||||       |||||||||| |||||||| |||||    
T  221597 acccactatgcgggtacccgtgggtattgagggatccatgggtacccatggatttttgaatttatttatttttttgtacaaataaaaactttttttaatt 221498  T
Q  255 accaaaaaacttcaacttttagacatccatagaaaa-ttcatgattcttatataatcca-----tatgttttatgatgtgaatgaagtggaaatggtgaa 348  Q
    ||||||| ||||||||||||| ||||||||| |||| ||||| | ||  | ||||||||     |||||||||||| |||||||||||||||| | | ||    
T  221497 accaaaagacttcaacttttaaacatccatacaaaatttcataaatc--acataatccatagattatgttttatgacgtgaatgaagtggaaacgataaa 221400  T
Q  349 cttaataagat 359  Q
    |||||||||||    
T  221399 cttaataagat 221389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 46395072 - 46394976
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 372  Q
    ||||||||||||||||||||| ||| ||||| ||   |||||||||||||||||||||| |||||| |||||||||||||||||  |||||| ||||    
T  46395072 atccatagaaaattcatgatttttacataattcaggatatgttttatgatgtgaatgaaatggaaacggtgaacttaataagatgaattaaaaaaat 46394976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 1143465 - 1143410
Alignment:
Q  230 gtacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  1143465 gtacaaataataactttttttaattaccaaaaaacttcaatttttaaacatccata 1143410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 1143375 - 1143290
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcca-----tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||||||| ||||||||     ||||||||||||| |||||||||||||||   | |||||||||||||    
T  1143375 atccatagaaaattcatgattcttacataatccatatgatatgttttatgatatgaatgaagtggaaacattaaacttaataagat 1143290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 18906331 - 18906384
Alignment:
Q  231 tacaaataataactttttctaattaccaaaaaacttcaacttttagacatccat 284  Q
    |||||| ||||||||||| |||||||||||||||||||||||||| ||||||||    
T  18906331 tacaaagaataactttttttaattaccaaaaaacttcaacttttaaacatccat 18906384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 46395161 - 46395107
Alignment:
Q  231 tacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    |||||||||||||||||| ||||||||||||| |||||||| ||| |||||||||    
T  46395161 tacaaataataactttttttaattaccaaaaatcttcaactattaaacatccata 46395107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 359
Target Start/End: Complemental strand, 34442433 - 34442390
Alignment:
Q  316 gttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  34442433 gttttatgatgtgaatgaagttgaaacggtgaacttaataagat 34442390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 52597105 - 52597016
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcc---------atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||||||| |||||||         ||||||||| |||||| |||||||| ||||  ||||||||||||||||    
T  52597105 atccatagaaaattcatgattcttacataatccatatatatgatatgttttttgatgtaaatgaagtagaaacagtgaacttaataagat 52597016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 52597258 - 52597218
Alignment:
Q  157 ccactatgcgggtacccgcgggtattgaggtatctatggat 197  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  52597258 ccactatgcgggtacccgcggatattgaggtatccatggat 52597218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 46395244 - 46395194
Alignment:
Q  155 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatgg 205  Q
    |||||||||||| ||||||| ||||| ||||||||| |||| |||||||||    
T  46395244 acccactatgcgtgtacccgtgggtaatgaggtatccatgggtattcatgg 46395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 46395314 - 46395270
Alignment:
Q  96 ataatatgatacccgtcaccgtcccattggataaatatgataccc 140  Q
    ||||||||||||||||| ||| ||| ||||||||| |||||||||    
T  46395314 ataatatgatacccgtccccgccccgttggataaagatgataccc 46395270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 155 - 282
Target Start/End: Original strand, 16855532 - 16855659
Alignment:
Q  155 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttctaatt 254  Q
    |||||||||||||||||||||||||||||||||||  |||| ||  ||||||||||| ||||| ||||       ||| ||||||||||||||| |||||    
T  16855532 acccactatgcgggtacccgcgggtattgaggtattcatgggtacccatggatttttgaatttatttattttttggtataaataataactttttttaatt 16855631  T
Q  255 accaaaaaacttcaacttttagacatcc 282  Q
    ||||||||||||||||||||| ||||||    
T  16855632 accaaaaaacttcaacttttaaacatcc 16855659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 15921486 - 15921401
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||||||| ||||||||||||     |||| ||||||||||||||| |||| |||||||||||||||||    
T  15921486 atccatagaaaattcatgattcttacataatccatatgatatgttttttgatgtgaatgaagtagaaacggtgaacttaataagat 15921401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 157 - 372
Target Start/End: Complemental strand, 26503165 - 26502934
Alignment:
Q  157 ccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttct--aatt 254  Q
    ||||||||||||||||||||| |||||| ||||| |||| || ||||| |||||  ||||| ||||       |||| |||||||||||||| |  ||||    
T  26503165 ccactatgcgggtacccgcggatattgaagtatccatgggtactcatgaattttagaatttatttatttttg-gtactaataataactttttttttaatt 26503067  T
Q  255 accaaaaaacttcaacttttagacat-----------ccatagaaaattcatgattcttatataatccat----atgttttatgatgtgaatgaagtgga 339  Q
    ||| |||||||||||||||||  |||           ||||||||||||||||||||||| ||||  |||    ||||||||||||||||||||| || |    
T  26503066 accgaaaaacttcaacttttaagcattcatacataatccatagaaaattcatgattcttacataactcatggatatgttttatgatgtgaatgaaatgaa 26502967  T
Q  340 aatggtgaacttaataagatttattaaagaaat 372  Q
    ||  ||||||||||||||||  |||||| ||||    
T  26502966 aacagtgaacttaataagatgaattaaaaaaat 26502934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 16855678 - 16855764
Alignment:
Q  279 atccatagaaaa-ttcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    |||||||||||| ||||||||||||||||||||||||     ||||||||||||||||||||||| |||  ||||||||| ||||||    
T  16855678 atccatagaaaaattcatgattcttatataatccataggatatgttttatgatgtgaatgaagtgaaaacagtgaacttagtaagat 16855764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 28247194 - 28247111
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||| ||| || ||  |   |||||||||||||||||||||||| |||| |||||||||||||||||    
T  28247194 atccatagaaaattcatgatttttacattatttagaatatgttttatgatgtgaatgaagtagaaacggtgaacttaataagat 28247111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 359
Target Start/End: Original strand, 32903656 - 32903737
Alignment:
Q  283 atagaaaattcatgattcttatataatcca-----tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||| ||||| ||     ||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  32903656 atagaaaattcatgattcttacataatacataggttatgtttcatgatgtgaatgaagtggaaacggtaaacttaataagat 32903737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 15921576 - 15921522
Alignment:
Q  231 tacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    |||||||||||||||||| | |||||||||||||||||| ||||| | |||||||    
T  15921576 tacaaataataactttttttgattaccaaaaaacttcaagttttaaatatccata 15921522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 28247283 - 28247229
Alignment:
Q  231 tacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    |||||| ||||||||||| ||||||| ||||| |||||||||||| |||| ||||    
T  28247283 tacaaaaaataactttttttaattacaaaaaatcttcaacttttaaacattcata 28247229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 203
Target Start/End: Complemental strand, 28247366 - 28247320
Alignment:
Q  157 ccactatgcgggtacccgcgggtattgaggtatctatggatattcat 203  Q
    |||||||||||||| ||  |||||||||||||||||||| |||||||    
T  28247366 ccactatgcgggtatccatgggtattgaggtatctatgggtattcat 28247320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 28084403 - 28084467
Alignment:
Q  231 tacaaataataactttttctaattaccaaaaaacttcaacttttagacatccatagaaaattcat 295  Q
    |||||| | |||| |||| ||||||| |||| ||||||||||||| ||||||||| | |||||||    
T  28084403 tacaaagattaaccttttttaattactaaaagacttcaacttttatacatccatacataattcat 28084467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 32903561 - 32903613
Alignment:
Q  230 gtacaaataataactttttctaatt-accaaaaaacttcaacttttagacatc 281  Q
    ||||||||||||||||||| ||||| |  |||||||||||||||||| |||||    
T  32903561 gtacaaataataactttttttaattaaaaaaaaaacttcaacttttaaacatc 32903613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 282 - 372
Target Start/End: Complemental strand, 4334074 - 4333979
Alignment:
Q  282 catagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 372  Q
    |||||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||    
T  4334074 catagaaaattcatgattcttacataatccatagaatatgttttatgatgtgaatgaagtggaaacgatgaacttaataagatgaattaaaaaaat 4333979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 32923330 - 32923246
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    |||||||||||||| || ||||||| ||||||||||     ||||||||||||| |||||||||||||   |||||||||||||||    
T  32923330 atccatagaaaatt-attattcttacataatccataagatgtgttttatgatgtaaatgaagtggaaacaatgaacttaataagat 32923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 4334240 - 4334110
Alignment:
Q  155 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttcta-at 253  Q
    ||||||||||| | ||||||  | |||||||||||| |||| ||  |||| |||||| ||||| ||||       ||| ||||||||||||||| |  ||    
T  4334240 acccactatgcagatacccgtagatattgaggtatccatgg-tacccatgaatttttgaatttatttactttttggtaaaaataataactttttttttat 4334142  T
Q  254 taccaaaaaacttcaacttttagacatccata 285  Q
    |||||||||||||||||||||| |||| ||||    
T  4334141 taccaaaaaacttcaacttttaaacattcata 4334110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 32923398 - 32923365
Alignment:
Q  252 attaccaaaaaacttcaacttttagacatccata 285  Q
    |||||||||||||||||||||||| |||||||||    
T  32923398 attaccaaaaaacttcaacttttaaacatccata 32923365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 41137786 - 41137880
Alignment:
Q  283 atagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 372  Q
    ||||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||||| |||||| ||||||||||  |||||| ||||    
T  41137786 atagaaaattcatgattcttacataatccataagatatgttttatgatgtgaatgaagtggaaacggtgaatttaataagatgaattaaaaaaat 41137880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 6801259 - 6801344
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||| ||||||| ||||||||||||     |||| | ||||||||||||| ||||  ||||||||||||||||    
T  6801259 atccatagaaaattcattattcttacataatccatatgatatgtttttttatgtgaatgaagtagaaactgtgaacttaataagat 6801344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 33359141 - 33359207
Alignment:
Q  230 gtacaaataataactttttct-aattaccaaaaaacttcaacttttagacatccatagaaaattcat 295  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||| ||||||||| | |||||||    
T  33359141 gtacaaataataacttttttttaattataaaaaaacttcaacttttaaacatccatacataattcat 33359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 33359232 - 33359288
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcc-----atatgttttatgatgtgaa 330  Q
    ||||||||||||||||||||||||| |||||||     |||||||||||||||||||    
T  33359232 atccatagaaaattcatgattcttacataatccataggatatgttttatgatgtgaa 33359288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 41137713 - 41137750
Alignment:
Q  233 caaataataactttttctaattaccaaaaaacttcaact 271  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  41137713 caaataataacttttt-taattaccaaaaaacttcaact 41137750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 778742 - 778657
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||||||| ||||||||||||     |||||||||||||||||||| ||||  ||||||||||||||||    
T  778742 atccatagaaaattcatgattcttacataatccatatgatatgttttatgatgtgaatgaagtagaaacagtgaacttaataagat 778657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 150 - 295
Target Start/End: Complemental strand, 45885586 - 45885440
Alignment:
Q  150 tggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataac-ttttt 248  Q
    |||| ||||||||||||| |||||||||||||||||||||  |||||||  ||||||||||| ||||| |||        ||||||| |||||| |||||    
T  45885586 tggatacccactatgcggatacccgcgggtattgaggtattcatggatacccatggatttttgaatttattttttctttggtacaaacaataactttttt 45885487  T
Q  249 ctaattaccaaaaaacttcaacttttagacatccatagaaaattcat 295  Q
     ||||||||||||||  | |||||||| ||||||||| | |||||||    
T  45885486 ttaattaccaaaaaaaattaacttttaaacatccatacataattcat 45885440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 43127108 - 43127191
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||| ||||||| | ||||||   ||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  43127108 atccatagaaaattcattattcttacacaatccaggatatcttttatggtgtgaatgaagtggaaacggtgaacttaataagat 43127191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 38032446 - 38032401
Alignment:
Q  230 gtacaaataataactttttctaattaccaaaaaacttcaactttta 275  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  38032446 gtacaaataataactttttttaattaccaaaaaacttcaactttta 38032401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 778832 - 778777
Alignment:
Q  230 gtacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||    
T  778832 gtacaaataataactttttttaattaccataaaacttcaaattttaaacatccata 778777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 38032537 - 38032480
Alignment:
Q  150 tggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatggat 207  Q
    |||| ||||||||||| |||||||||||||||||||||||| |||| |||| ||||||    
T  38032537 tggatacccactatgcaggtacccgcgggtattgaggtatccatgggtattaatggat 38032480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 21859508 - 21859453
Alignment:
Q  230 gtacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    |||||||||| |||| ||| |||||||||||| ||||||||||||| |||||||||    
T  21859508 gtacaaataacaactctttttaattaccaaaagacttcaacttttaaacatccata 21859453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 2455925 - 2455884
Alignment:
Q  244 tttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||| |||||||||||||||||||||||||| |||||||||    
T  2455925 tttttttaattaccaaaaaacttcaacttttaaacatccata 2455884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 21859417 - 21859335
Alignment:
Q  282 catagaaaattcatgattcttatataatcc-----atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    |||||||||||||||||||||| ||| |||     ||||||||||||| ||||||||||||  || | | |||||||||||||    
T  21859417 catagaaaattcatgattcttagatactccataagatatgttttatgacgtgaatgaagtgacaacgataaacttaataagat 21859335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 373
Target Start/End: Complemental strand, 38032283 - 38032230
Alignment:
Q  320 tatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaata 373  Q
    |||||| ||||||||||||||| | |||||||||||||||  |||||| |||||    
T  38032283 tatgatatgaatgaagtggaaacgatgaacttaataagatgaattaaaaaaata 38032230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 41350018 - 41349973
Alignment:
Q  250 taattaccaaaaaacttcaacttttagacatccatagaaaattcat 295  Q
    ||||||| |||||||||||| ||||||||||||||| | |||||||    
T  41350018 taattactaaaaaacttcaatttttagacatccatacacaattcat 41349973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 21237149 - 21237109
Alignment:
Q  100 tatgatacccgtcaccgtcccattggataaatatgataccc 140  Q
    |||||||||| || ||||||| |||||||||||||||||||    
T  21237149 tatgatacccatccccgtcccgttggataaatatgataccc 21237109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 51004195 - 51004110
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||| ||||||||||||||||| |||||||||| |     ||||||||||||||||||||||||| |||||||||||||||||    
T  51004195 atccatataaaattcatgattcttacataatccataggatacgttttatgatgtgaatgaagtggaaacggtgaacttaataagat 51004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 282 - 359
Target Start/End: Complemental strand, 16543933 - 16543851
Alignment:
Q  282 catagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    |||||||||||||||||||||| ||||||||||     ||||||||||| ||||||||||||||| ||| |||||||||||||    
T  16543933 catagaaaattcatgattcttacataatccataggatatgttttatgatttgaatgaagtggaaacggtaaacttaataagat 16543851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 17145356 - 17145309
Alignment:
Q  312 atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  17145356 atatgttttatgatgtgaatgaagtggaaaccgtgaacttaataagat 17145309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 51004285 - 51004230
Alignment:
Q  230 gtacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||| |||||||||    
T  51004285 gtacaaattataactttttttaattaccaaaaaacttcaaattttaaacatccata 51004230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 279 - 372
Target Start/End: Complemental strand, 3303344 - 3303248
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaat 372  Q
    ||||||||||||||||||||| ||| ||||| ||   ||||||||||||||||||| ||||||||| | |||||  ||||||||  |||||| ||||    
T  3303344 atccatagaaaattcatgatttttacataattcaggatatgttttatgatgtgaataaagtggaaacgatgaacaaaataagatgaattaaaaaaat 3303248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 17145479 - 17145366
Alignment:
Q  155 acccactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnngtacaaataataactttttctaatt 254  Q
    |||||||||||||||||| | ||||||||| ||||| |||| ||  ||||||||||| ||||| ||||       || ||||| |||||||||| ||| |    
T  17145479 acccactatgcgggtacctgtgggtattgaagtatccatgggtacccatggatttttgaatttatttattttttggtgcaaatgataacttttt-taact 17145381  T
Q  255 accaaaaaacttcaa 269  Q
    |||||||||||||||    
T  17145380 accaaaaaacttcaa 17145366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 17586507 - 17586450
Alignment:
Q  238 aataactttttctaattaccaaaaaacttcaacttttagacatccatagaaaattcat 295  Q
    ||||||||||| |||||||||||||||||||||||||| |||| |||| | |||||||    
T  17586507 aataactttttttaattaccaaaaaacttcaacttttaaacattcatatataattcat 17586450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 3303512 - 3303464
Alignment:
Q  157 ccactatgcgggtacccgcgggtattgaggtatctatggatattcatgg 205  Q
    |||||||||||||| ||| ||||||||||||||| |||| |||||||||    
T  3303512 ccactatgcgggtatccgtgggtattgaggtatccatgggtattcatgg 3303464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 275
Target Start/End: Complemental strand, 12417370 - 12417339
Alignment:
Q  244 tttttctaattaccaaaaaacttcaactttta 275  Q
    ||||||||||||||||||||||||||||||||    
T  12417370 tttttctaattaccaaaaaacttcaactttta 12417339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 280
Target Start/End: Original strand, 18524101 - 18524152
Alignment:
Q  230 gtacaaataataactttttcta-attaccaaaaaacttcaacttttagacat 280  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||| ||||    
T  18524101 gtacaaataataactttttttttattaccaaaaaacttcaacttttaaacat 18524152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 231 - 285
Target Start/End: Complemental strand, 16544025 - 16543971
Alignment:
Q  231 tacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    |||| ||||||||||||| ||||||||||||||||| |  ||||| |||||||||    
T  16544025 tacatataataactttttttaattaccaaaaaactttacattttaaacatccata 16543971  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 3303432 - 3303379
Alignment:
Q  230 gtacaaataataactttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||||||||||| |||||  ||||| |||||| |||||||||||| |||||||||    
T  3303432 gtacaaataataatttttt--aattatcaaaaatcttcaacttttaaacatccata 3303379  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 9116588 - 9116556
Alignment:
Q  250 taattaccaaaaaacttcaacttttagacatcc 282  Q
    |||||||||||||||||||||||||| ||||||    
T  9116588 taattaccaaaaaacttcaacttttaaacatcc 9116556  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 285
Target Start/End: Complemental strand, 3858471 - 3858343
Alignment:
Q  158 cactatgcgggtacccgcgggtattgaggtatctatggatattcatggatttttaaatttgtttannnnnnng-tacaaataataactttttctaattac 256  Q
    ||||||| ||| ||||| ||||||||||||||| |||| ||  ||||||||||| ||||| ||||       | |||||||||||||||||| ||| |||    
T  3858471 cactatgtgggcacccgtgggtattgaggtatccatgggtacccatggatttttgaatttttttatttttttggtacaaataataactttttttaaatac 3858372  T
Q  257 caaaaaacttcaacttttagacatccata 285  Q
    ||||||| ||||||||||| |||||||||    
T  3858371 caaaaaatttcaacttttaaacatccata 3858343  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 44791190 - 44791286
Alignment:
Q  282 catagaaaattcatgattcttatataatcc-----atatgttttatgatgtgaatgaagtggaaatggtgaacttaataagatttattaaagaaata 373  Q
    |||||||||||||||||||||| ||||| |     |||||||||||||||||||||||||| ||| ||| |||||||||||||  |||||| |||||    
T  44791190 catagaaaattcatgattcttacataatgcatatgatatgttttatgatgtgaatgaagtgaaaacggtaaacttaataagatgaattaaaaaaata 44791286  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 3858308 - 3858223
Alignment:
Q  279 atccatagaaaattcatgattcttatataatccatatg-----ttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||| ||||||||||||||||| ||||||||| ||     ||||||||||||||| |||| |||| |||||||||||||||||    
T  3858308 atccatataaaattcatgattcttacataatccatttgatatattttatgatgtgaataaagtagaaacggtgaacttaataagat 3858223  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 26041842 - 26041925
Alignment:
Q  279 atccatagaaaattcatgattcttatataatcca---tatgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||| || |||| | |||| |   ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  26041842 atccatagaaaattcattatccttacacaatctaggatatgttttatgatatgaatgaagtggaaacggtgaacttaataagat 26041925  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 359
Target Start/End: Complemental strand, 29808319 - 29808238
Alignment:
Q  283 atagaaaattcatgattcttatataatccata-----tgttttatgatgtgaatgaagtggaaatggtgaacttaataagat 359  Q
    ||||||||||||||||| ||| ||||||||||     ||||||||||||||||||||||| |||| | ||||||||||||||    
T  29808319 atagaaaattcatgatttttacataatccataggatatgttttatgatgtgaatgaagtgaaaattgcgaacttaataagat 29808238  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 26041759 - 26041800
Alignment:
Q  234 aaataataactttttctaattaccaaaaaacttcaactttta 275  Q
    ||||||||||||||| |||||| |||||||||||||||||||    
T  26041759 aaataataactttttttaattatcaaaaaacttcaactttta 26041800  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 44791009 - 44791067
Alignment:
Q  147 tcatggacacccactatgcgggtacccgcgggtattgaggtatctatggatattcatgg 205  Q
    |||||| |||||||||||| |||| ||| ||||||||||||||| |||| |||| ||||    
T  44791009 tcatgggcacccactatgcaggtatccgtgggtattgaggtatccatgggtatttatgg 44791067  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 34296815 - 34296774
Alignment:
Q  244 tttttctaattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||| |||||||||||||||||||||||||| | |||||||    
T  34296815 tttttttaattaccaaaaaacttcaacttttaaatatccata 34296774  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 44791096 - 44791152
Alignment:
Q  230 gtacaaataataactttttct-aattaccaaaaaacttcaacttttagacatccata 285  Q
    ||||||||||||||||||| | ||||||||||| | || |||||||| |||||||||    
T  44791096 gtacaaataataacttttttttaattaccaaaatattttaacttttaaacatccata 44791152  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 285
Target Start/End: Original strand, 52689127 - 52689159
Alignment:
Q  253 ttaccaaaaaacttcaacttttagacatccata 285  Q
    ||||||||||||||||||||||| |||||||||    
T  52689127 ttaccaaaaaacttcaacttttaaacatccata 52689159  T

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