View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_31 (Length: 209)
Name: NF6240_low_31
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 51530157 - 51529950
Alignment:
| Q |
2 |
taacagacgagagaaattcgattacctgatatgctcccaccatatggactataatgcatacattccccaaagcaaccaacaagaagggctcataaaatcc |
101 |
Q |
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| T |
51530157 |
taacagacgagagaaattcgattacctgatatgctcccaccatatggactataatgcatacattccccaaagcaaccaacaagaagggctcataaaatcc |
51530058 |
T |
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| Q |
102 |
aaaaccagtgaggatgttccctggggtgtgatcaccaaatgcagcatagccaagtgaaccacataggaggaaaagtattgtcatcgtagtgatccccaac |
201 |
Q |
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| T |
51530057 |
aaaaccagtgaggatgttccctggggtgtgatcaccaaatgcagcatagccaagtgaaccacataggaggaaaagtattgtcattgtagtgatccccaac |
51529958 |
T |
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| Q |
202 |
atatttgc |
209 |
Q |
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|||||||| |
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| T |
51529957 |
atatttgc |
51529950 |
T |
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