View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_6 (Length: 433)
Name: NF6240_low_6
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 43623169 - 43623595
Alignment:
| Q |
1 |
caacacattttggggcctatggttggtgctgcaggtaaccttaattaatttttcccctttaactagttnnnnnnnctcttacgtctaattttctccaatt |
100 |
Q |
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| T |
43623169 |
caacacattttggggcctatggttggtgctacaggtaaccttaattaatttttcccctttaactagttaaaaaaactcttacgtctaattttctccaatt |
43623268 |
T |
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| Q |
101 |
gattaattaggcttttgtattaaaagactacccttcaaagttgagctttacgactctccaatgtttcttaagctcaattcaatctttagctattgccttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43623269 |
gattaattaggcttttgtattaaaagactacccttcaaagttgagctttacgactctccaatgtttcttaagctcaattcaatctttagctattgccttg |
43623368 |
T |
|
| Q |
201 |
gccatagaaagggacattgagcagtggaaattgggttggaacgtcagcctcctcgctatagcctattgtgtaatcctctcaatttcatctactaatttaa |
300 |
Q |
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| T |
43623369 |
gccatagaaagggacattgagcagtggaaattgggttggaacgtcagcctcctcgctatagcctattgtgtaaacctctcagtttcatctactaatttaa |
43623468 |
T |
|
| Q |
301 |
ttttggttatacaacttttagtattatacactatgcattaaaatattattaatttgtgttggtagggaattattgtgacaggggtcggatattacttaat |
400 |
Q |
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| T |
43623469 |
-tttggttatacaacttttagtattatacactatgcattaaaatattattaatttttgttggtagggaattattgtgacaggggtcggatattacttaat |
43623567 |
T |
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| Q |
401 |
gacatgggtcatagagaagaaagggcct |
428 |
Q |
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| T |
43623568 |
gacatgggtcatagagaagaaagggcct |
43623595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 109 - 285
Target Start/End: Complemental strand, 42709394 - 42709218
Alignment:
| Q |
109 |
aggcttttgtattaaaagactacccttcaaagttgagctttacgactctccaatgtttcttaagctcaattcaatctttagctattgccttggccataga |
208 |
Q |
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||||||||||| |||| ||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||| |
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| T |
42709394 |
aggcttttgtaataaaggaccacccttcaaagttaatctttacgactctccaatgtttattaagctcaattcagtctttagctgttgccttcgccataga |
42709295 |
T |
|
| Q |
209 |
aagggacattgagcagtggaaattgggttggaacgtcagcctcctcgctatagcctattgtgtaatcctctcaattt |
285 |
Q |
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| T |
42709294 |
aagggacattcagcactggaaattgggttggaacgtcaccttcctcgctatagcctattgtgtaatcctctcaattt |
42709218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 424
Target Start/End: Complemental strand, 42709222 - 42709148
Alignment:
| Q |
351 |
aatttgtgttggtagggaatt-attgtgacaggggtcggatattacttaatgacatgggtcatagagaagaaagg |
424 |
Q |
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|||||||| |||||||||||| || | |||||||||| | |||||||||||||||||| |||||||||||||| |
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| T |
42709222 |
aatttgtgctggtagggaatttatagccacaggggtcgcactttacttaatgacatgggttatagagaagaaagg |
42709148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 241
Target Start/End: Original strand, 38765750 - 38765838
Alignment:
| Q |
153 |
actctccaatgtttcttaagctcaattcaatctttagctattgccttggccatagaaagggacattgagcagtggaaattgggttggaa |
241 |
Q |
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||||| ||||||||||||||||||||||| ||||||| | || ||||| ||||||| ||| |||| || ||||||||||||||||| |
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| T |
38765750 |
actcttcaatgtttcttaagctcaattcagtctttagtcgtagcgttggctgtagaaagagactttgaacaatggaaattgggttggaa |
38765838 |
T |
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