View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_7 (Length: 422)
Name: NF6240_low_7
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 43765140 - 43765542
Alignment:
| Q |
1 |
ttagcaagcaattaggacttgctcctaggcaagtcaaattttggttccaaaatcgtcgtacccaaatcaaggtattatttaaatcaactaaataaaaatt |
100 |
Q |
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| T |
43765140 |
ttagcaagcaattaggacttgctcctaggcaagtcaaattttggttccaaaatcgtcgtacccaaatcaaggtattatttaaatcaactaaataaaaatt |
43765239 |
T |
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| Q |
101 |
gtgctattttttgcattttaattattaggtgaacttaacaataatattaagcactacttgtgttgcattttttcaggcaatacaagagcgacatgaaaat |
200 |
Q |
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| T |
43765240 |
gtgctattttttgcattttaattattaggtgaatttaacaataatattaagcactacttgtgttgcattttttcaggcaatacaagagcgacatgaaaat |
43765339 |
T |
|
| Q |
201 |
tccttgttgaaatcagaaatagagaaactaagggagaaaaataagaccctacgagagaccataaataaggcttgttgccccaattgtggggtccccacca |
300 |
Q |
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| T |
43765340 |
tcattgttgaaatcagaaatagagaaactaagggagaaaaataagaccctacgagagaccataaataaggcttgttgccccaattgtggggtccccacca |
43765439 |
T |
|
| Q |
301 |
caaatagagatggtaccatggcaactgaagaacaacaactacgtattgaaaatgccaaactcaaagctgaggttatgattagaattaactcaaactatac |
400 |
Q |
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| T |
43765440 |
caaatagagatggtaccatggcaactgaagaacaacaactacgtattgaaaatgccaaactcaaagctgaggttatgattagaattaactcaaactatac |
43765539 |
T |
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| Q |
401 |
aac |
403 |
Q |
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| T |
43765540 |
aac |
43765542 |
T |
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