View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6240_low_8 (Length: 416)
Name: NF6240_low_8
Description: NF6240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6240_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 7 - 413
Target Start/End: Complemental strand, 7806225 - 7805825
Alignment:
| Q |
7 |
ctaaaggtgagttccctaaattaagcttgaattttaatagttagaatcgaagttattgattataaataatgagtatgtgaatactttatctttaatctag |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7806225 |
ctaaaggtgagttccctaaattaagcttgaattttaatagttagaatcggaattattgattataaataatgagtatgtgaat------tctttaatctag |
7806132 |
T |
|
| Q |
107 |
actctgtttatcgttagaaaaactgaaattagtgcttagaaaaatgattcttattcatgcaagagtcaggagatagttacaaaacggtataggcaagagg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7806131 |
cctctgtttatcgttagaaaaactgaaattagtgcttagaaatatgattcttattcatgcaagagtcaggagatagttacgaaacggtataggcaagagg |
7806032 |
T |
|
| Q |
207 |
agataccgttttttcctgttttagcagtgggaagacaaatcacatgaaaatgcctatatgtaacgccgttacagctgtgacacaacgttacggctgcgac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
7806031 |
agataccgttttttcctgttttagcagtgggaagacaaatcacatgaaaacgtcgatatgtaacgccgatacagctgtgacacaacgttacagctgcgac |
7805932 |
T |
|
| Q |
307 |
cgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttcaattcccgtatctgtg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7805931 |
cgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttcaattcccgtatctgtc |
7805832 |
T |
|
| Q |
407 |
ctcctcc |
413 |
Q |
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| T |
7805831 |
ctcctcc |
7805825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 7813964 - 7813877
Alignment:
| Q |
1 |
ctacttctaaaggtgagttccctaaattaagcttgaattttaatagttagaatcgaagttattgattataaataatgagtatgtgaat |
88 |
Q |
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|||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
7813964 |
ctacttttaaaggtgagttctctaaactaagcttgaattttaatagttagaatcggaattattgattataaataatgagtatgtgaat |
7813877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 397
Target Start/End: Complemental strand, 37081131 - 37081026
Alignment:
| Q |
292 |
cgttacggctgcgaccgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttca |
391 |
Q |
| |
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|||||| || ||||||| | ||| |||| |||||| | |||||| |||||||||||| |||||||| ||||||||||||| ||||| ||||||||||| |
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| T |
37081131 |
cgttacagccgcgaccgatcgttatagctgcgaaaacagaacacagtttccagatcttggtcatcacatcctctttatttatagcttcattactccttca |
37081032 |
T |
|
| Q |
392 |
attccc |
397 |
Q |
| |
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|||||| |
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| T |
37081031 |
attccc |
37081026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 37081218 - 37081123
Alignment:
| Q |
187 |
aaaacggtataggcaagaggagataccgttttttcctgttttag-cagtgggaagacaaatcacatgaaaatgcctatatgtaacgccgttacagc |
281 |
Q |
| |
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|||||||||| ||||||||| | ||||||||| ||||||||| | ||||||||| ||||||||||||| ||| || |||||||||||||||| |
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| T |
37081218 |
aaaacggtatgggcaagaggcaaaaccgtttttgcctgttttaaacggtgggaagaaaaatcacatgaaatcgccgttacgtaacgccgttacagc |
37081123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 32953371 - 32953448
Alignment:
| Q |
313 |
ttacagctacgaaaaaataacacaa-tttccagatctttgtcatcacctcctctttatttacagctttgttactcctt |
389 |
Q |
| |
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|||||||| | |||||| ||||||| |||||||||| | ||||||||||||| ||||||||||||| |||||||||| |
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| T |
32953371 |
ttacagctgcaaaaaaagaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctt |
32953448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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