View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6241_high_4 (Length: 258)
Name: NF6241_high_4
Description: NF6241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6241_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 27448569 - 27448821
Alignment:
| Q |
1 |
atcggtgtgcaagatcnnnnnnnggccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgttaaatttttctg |
100 |
Q |
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| T |
27448569 |
atcggtgtgcaagatctttttttggccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaaatttttctg |
27448668 |
T |
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| Q |
101 |
taaacaagaattgcatatatttttagataagttttctaattgttatatatatatgaaataattttgctgtgccgcccaaaccataattaatagaa---ag |
197 |
Q |
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| T |
27448669 |
taaacaagaattgcatatatttttagataagttttctaattgttatatatatatgaaataattttgctgttccgcccaaaccataattaacagaaagtag |
27448768 |
T |
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| Q |
198 |
ggacgttcctaattataacatagtccttcaatgatgatgaacaataactgatg |
250 |
Q |
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| T |
27448769 |
ggacgttcctaattataacatagtccttcaatgatgatgaacaataattgatg |
27448821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 27430628 - 27430702
Alignment:
| Q |
26 |
ccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgttaaatttttctg |
100 |
Q |
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|||||||||||||| |||||||||||||| |||| | |||||||||||||||||||||||| ||| ||||||| |
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| T |
27430628 |
ccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaaacttttctg |
27430702 |
T |
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