View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6241_high_5 (Length: 245)
Name: NF6241_high_5
Description: NF6241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6241_high_5 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 42715642 - 42715433
Alignment:
| Q |
15 |
ggtatttaagaatcgtccttagcttatataaaactaggctttcgagtttaatgattttataaactgtgagaaattcaccactcacagttttatctaattt |
114 |
Q |
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| T |
42715642 |
ggtatttaagaatcgtccttagcttatataaaactaggctttcgagtttgatgattttataaactgtgagaaattcaccactcacacttttatctaattt |
42715543 |
T |
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| Q |
115 |
gattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatcttttgcactctgtttgtgtccaagtataatttat |
214 |
Q |
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| T |
42715542 |
gattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatcttttgcactctgtttgtgtccaagtataatttat |
42715443 |
T |
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| Q |
215 |
acttcatttt |
224 |
Q |
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||||| |||| |
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| T |
42715442 |
acttcgtttt |
42715433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 23467 - 23324
Alignment:
| Q |
81 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
180 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
23467 |
tgagaaattcaccactcatagttttatctaatttgattttgatatcttgcttcataattattcagcacataagtttaaatggatctttgtctaatttatc |
23368 |
T |
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| Q |
181 |
ttttgcactctgtttgtgtccaagtataatttatacttcatttt |
224 |
Q |
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| T |
23367 |
ttgtgcactctgtttgcgtccaagtataatttatacttcatttt |
23324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 81 - 224
Target Start/End: Complemental strand, 42836386 - 42836243
Alignment:
| Q |
81 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
180 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
42836386 |
tgagaaattcaccactcatagttttatctaatttgattttgatatcttgcttcataattattcagcacataagtttaaatggatctttgtctaatttatc |
42836287 |
T |
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| Q |
181 |
ttttgcactctgtttgtgtccaagtataatttatacttcatttt |
224 |
Q |
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| T |
42836286 |
ttgtgcactctgtttgcgtccaagtataatttatacttcatttt |
42836243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 36931281 - 36931151
Alignment:
| Q |
81 |
tgagaaattcaccactcacagttttatctaatttgattttgatatcttgcttcataattattcagcacattaatttaaatggatctttgtctaatttatc |
180 |
Q |
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||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||||| |
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| T |
36931281 |
tgagaaattcatcactcacagttttatctaatttgtttttgatatcttgcttcataatcatccatcacattaattt-aatggatctttgtctaatttatc |
36931183 |
T |
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| Q |
181 |
ttttgcactctgtttgtgtccaagtataattt |
212 |
Q |
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||||| ||||| ||||| || ||||| ||||| |
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| T |
36931182 |
ttttgtactctctttgtatctaagtacaattt |
36931151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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