View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6241_low_1 (Length: 370)

Name: NF6241_low_1
Description: NF6241
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6241_low_1
NF6241_low_1
[»] chr2 (3 HSPs)
chr2 (252-300)||(17616578-17616626)
chr2 (69-138)||(7501378-7501446)
chr2 (251-295)||(17698334-17698378)
[»] chr8 (1 HSPs)
chr8 (72-138)||(24279642-24279707)
[»] chr4 (1 HSPs)
chr4 (269-342)||(23056985-23057059)
[»] chr1 (3 HSPs)
chr1 (72-138)||(37701557-37701622)
chr1 (72-138)||(37683895-37683960)
chr1 (279-337)||(38336811-38336869)
[»] chr6 (1 HSPs)
chr6 (69-137)||(21528877-21528944)
[»] chr3 (1 HSPs)
chr3 (69-137)||(51229546-51229613)
[»] chr7 (1 HSPs)
chr7 (83-137)||(43779796-43779849)
[»] chr5 (1 HSPs)
chr5 (73-138)||(23023852-23023916)


Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 17616626 - 17616578
Alignment:
Q  252 acggcagggtcgtggtcggatggacgaatttgagtagatccggtggtgg 300  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  17616626 acggcagggtcgtggttggatggacggatttgagtagatccggcggtgg 17616578  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 7501446 - 7501378
Alignment:
Q  69 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 138  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| ||||||||||||||||||||    
T  7501446 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatgc 7501378  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 17698378 - 17698334
Alignment:
Q  251 gacggcagggtcgtggtcggatggacgaatttgagtagatccggt 295  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  17698378 gacggcagggtcgtggtaggagagacggatttgagtagatccggt 17698334  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 24279642 - 24279707
Alignment:
Q  72 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 138  Q
    |||||||||||||||||||||||| |||   ||||||  || |||||||||||||||||||||||||    
T  24279642 aaccaatgactcagtgacccagtaacctcg-tcaagtcaatgaccgatccgagttttaaaactatgc 24279707  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 342
Target Start/End: Original strand, 23056985 - 23057059
Alignment:
Q  269 ggatggacgaatttgagtagatccggtggt-ggggtgaacggcggtggtgagatggaggatgggtgatggtggtg 342  Q
    |||||||  ||||||||||||||||||||| |||||||||| ||||||||||  | |||||| |||||| |||||    
T  23056985 ggatggaaaaatttgagtagatccggtggtgggggtgaacgacggtggtgaggagaaggatgagtgatgatggtg 23057059  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 37701557 - 37701622
Alignment:
Q  72 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 138  Q
    |||||||||||||||||| |||||||| |||   |||||||||||  ||||||||||||||||||||    
T  37701557 aaccaatgactcagtgacgcagtaccc-ttactgagttgatcaccagtccgagttttaaaactatgc 37701622  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 37683960 - 37683895
Alignment:
Q  72 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 138  Q
    |||||||||||||||||| |||||||| |||   ||||||||||   ||||||||||||||||||||    
T  37683960 aaccaatgactcagtgacgcagtaccc-ttactgagttgatcactagtccgagttttaaaactatgc 37683895  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 38336869 - 38336811
Alignment:
Q  279 atttgagtagatccggtggtggggtgaacggcggtggtgagatggaggatgggtgatgg 337  Q
    |||||||||| | || ||||||||||||||||||||||||   | ||||||||||||||    
T  38336869 atttgagtagtttcgatggtggggtgaacggcggtggtgaagagaaggatgggtgatgg 38336811  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 21528877 - 21528944
Alignment:
Q  69 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 137  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| |||||||||||||||||||    
T  21528877 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatg 21528944  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 51229546 - 51229613
Alignment:
Q  69 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 137  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| |||||||||||||||||||    
T  51229546 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatg 51229613  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 137
Target Start/End: Original strand, 43779796 - 43779849
Alignment:
Q  83 cagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 137  Q
    |||||||||| ||||||| | | ||| ||||||||||||||||||||||||||||    
T  43779796 cagtgacccaataccctt-accgagtcgatcaccgatccgagttttaaaactatg 43779849  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 23023916 - 23023852
Alignment:
Q  73 accaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 138  Q
    ||||||||| ||||||| |||||||||| | | ||| |||||||| | ||||||||||||||||||    
T  23023916 accaatgacccagtgactcagtaccctt-accgagtcgatcaccggttcgagttttaaaactatgc 23023852  T

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