View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6242_low_1 (Length: 694)
Name: NF6242_low_1
Description: NF6242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6242_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 504 - 671
Target Start/End: Complemental strand, 38733206 - 38733039
Alignment:
| Q |
504 |
gttgatcatcatcgtcgtcttcttcatcttcctcttgttcgagttggtcgatgaagtgaggttcgcggtgatgcttgacatggcgagattgttgaagaag |
603 |
Q |
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| T |
38733206 |
gttgatcatcatcgtcgtcttcttcatcttcctcttgttcgagttggtcgatgaagtgtggttcgcggtgatgcttgacatggcgagattgttgaagaag |
38733107 |
T |
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| Q |
604 |
ctgcgaagtttcttcttcatcttccattgactcgggtaaggaacgcttctgggctggcattgttgctc |
671 |
Q |
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| T |
38733106 |
ctgcgaagtttcttcttcatcttccattgactcgggtaaggaacgcttctgggctggcattgttgctc |
38733039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 38733619 - 38733495
Alignment:
| Q |
91 |
gatcaaaacatgaatctagtaaaacaaagcacaaagcagaagttaaaaaacaatgcaaatgaaagagtgagagtaagagagattactcaggtttttcttc |
190 |
Q |
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| T |
38733619 |
gatcaaaacatgaatctagtaaaacaaagcacaaagcagaagttaaaaaacaatgcgtatgaaagagtgagagtaagagagattactcaggtttttcttc |
38733520 |
T |
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| Q |
191 |
agagtcagaggattcatcggaatct |
215 |
Q |
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| T |
38733519 |
agagtcagaggattcatcagaatct |
38733495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 367 - 407
Target Start/End: Complemental strand, 38733343 - 38733303
Alignment:
| Q |
367 |
gttaccttgtgatttttccttttcatcgtcatggtgctgcc |
407 |
Q |
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| T |
38733343 |
gttaccttgtgatttttccttttcatcgtcatggtgctgcc |
38733303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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