View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6242_low_2 (Length: 586)
Name: NF6242_low_2
Description: NF6242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6242_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 6629909 - 6629525
Alignment:
| Q |
20 |
gataggtgtgtgtgaggtgggtttgggttgaggttatgcctttatcacgagtgatttgttcgttagttcgaggttttagggattcctttaggaatggtan |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6629909 |
gataggtgtgtgtgaggtgggtttgggttgaggttatgcctttatcacgagtggtttgttcgttagttcgaggttttagggattcctttaggaatggtat |
6629810 |
T |
|
| Q |
120 |
nnnnnnnccatgtcatcttttgtggtcttttaggttgtctagcggttttttgactttcctacttccctttggttaggttttcttggtgctaatttttcgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6629809 |
ttttt--ccatgtcatcttttgtggtcttttaggttgtctagcggttttgtgactttcctacttccctttggttaggttttcttggtgctaatttttcgt |
6629712 |
T |
|
| Q |
220 |
gggtttagtactgcatgtacttcgactcagttgttgggtttagtagttcttattcttgcatttgatttaacagtaatatcttattttgttgttaaaaaat |
319 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
6629711 |
gggtttagtactacatgtacttcgactaagttgttgggtttagtagttcttattcttacatctgatttaacaataatatcttattttgttgttaaaaaat |
6629612 |
T |
|
| Q |
320 |
annnnnnnnnnnnnnnacgaaagtcttaagagaaaaggaattgaagatggtttttaaacgaatttcttcaattttctactcccacag |
406 |
Q |
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| T |
6629611 |
attttttattttttttacgaaagtcttaagagaaaaggaattgaagatggtttttaaacgaatttcttcaattttctactcccacag |
6629525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 6803466 - 6803214
Alignment:
| Q |
20 |
gataggtgtgtgtgaggtgggtttgggttgaggttatgcctttatcacgagtgatttgttcgttagttcgaggttttagggattcctttaggaatggtan |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
6803466 |
gataggagtgtgtgaggtgggtttgggttgaggttatggctttatcacgagtgatttgttcgttagttcgaggttttagcgattcttttaggaatggtat |
6803367 |
T |
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| Q |
120 |
nnnnnnnccatgtcatcttttgtggtcttttaggttgtctagcggttttttgactttcctacttcccttt--ggttaggttttcttggtgctaatttttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6803366 |
tttttttccatgtcatcttttgtggtcttttaggttgtctagcggttttttgactttcctacttccctttttggttaggttttcttggtgctaatttttc |
6803267 |
T |
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| Q |
218 |
gtgggtttagtactgcatgtacttcgactcagttgttgggtttagtagttctt |
270 |
Q |
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|||||||||||||| |||| ||||||||||| |||||||||||||| |||||| |
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| T |
6803266 |
gtgggtttagtactacatgcacttcgactcaattgttgggtttagtggttctt |
6803214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 502 - 562
Target Start/End: Complemental strand, 6629430 - 6629370
Alignment:
| Q |
502 |
cattttggtaataatgtacattaattagcattgagacgggaattcgtgcccgtctatatcc |
562 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6629430 |
cattttggtaataatgtacattaattagcattgagacgggaattcgtgcccgtctatatcc |
6629370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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