View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6242_low_3 (Length: 378)
Name: NF6242_low_3
Description: NF6242
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6242_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 39530850 - 39530487
Alignment:
| Q |
1 |
ttgttctgtcttcaaattactctcggttctttcaccatctttatggcatgaattggaataaaagatgtgatgtaatggattctaatccaaatcaagttaa |
100 |
Q |
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| T |
39530850 |
ttgttctgtcttcaaattactctcggttctttcaccatctttctggcatgaattggaataaaagatgtgatgtaatggattctaatccaaatcaagttaa |
39530751 |
T |
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| Q |
101 |
ttacaaactaaattaacaattttaaattttcatgaagagtagtactagctagttaaacgagtcttgtaatatcaaggggccaagggaatatcacaagggt |
200 |
Q |
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| T |
39530750 |
ttacaaactaaattaacaattttaaattttaatgaagagtagtactagctagttaaacgagtcttgtaatatcaagggaccaagggaatatcacaagggt |
39530651 |
T |
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| Q |
201 |
ttagtgaagtgtttgatgtttaatgtgtgtgattattataaatttatgtgcggagtttgtttcctctattcataagaaaatggaaacaagggagtaaaat |
300 |
Q |
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| T |
39530650 |
ttagtgaagtgtttgatgtttaatgtgtgtgattattataaatttatgtgcggagtttgtttcctctattcataagaaaatggaaacaagggagtaaaat |
39530551 |
T |
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| Q |
301 |
gataggaaaatatgttgacatgatgcaattaaacattaaatcaatttctcattttcagtttgcc |
364 |
Q |
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| T |
39530550 |
gataggaaaatatgctgacatgatgcaattaaacattaaatcgatttctcattttcagtttgcc |
39530487 |
T |
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