View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6243_low_1 (Length: 450)
Name: NF6243_low_1
Description: NF6243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6243_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 51511145 - 51511573
Alignment:
| Q |
10 |
catcatcatcat-atatatatacaataaaatatctatctagtttagagttcgatcctgatcagtgcgtacaacaaaaaacgtacgttgaaagaggtcaac |
108 |
Q |
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| T |
51511145 |
catcatcatcatcatatatatacaataaaatatctatctagtttagagttcgatcctgatcagtgcgtacaacaaaaaacgtacgttgaaagaggtcaac |
51511244 |
T |
|
| Q |
109 |
tacttaaacatacatccgttacattgagcgattaatctctatagttgaacgtgcagataccttaatttaccataaacttaatatgtacctagtaattaat |
208 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511245 |
tacttaaacatacatctgttacattgagcgattaatctctatagttgaacgtgtagataccttaatttaccataaacttaatatgtacctagtaattaat |
51511344 |
T |
|
| Q |
209 |
atcaagaaaggaggaaagaattgtacctctggttgtttgatgccaaggatgagaccacaaggcgacaagtcttgtgaaatttcacaaccaacttcttcat |
308 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511345 |
atcaagaaaggaggaaagaattgtacatctggttgtttgatgccaaggatgagaccacaaggcgacaagtcttgtgaaatttcacaaccaacttcttcat |
51511444 |
T |
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| Q |
309 |
agagagcatcatgatgaattctcttagtagaaggttgaacaataattttggagacaccagttccatgatgaagtaatctagcacagtgtgatggagtcaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51511445 |
agagagcatcatgatgaattctcttagtagaaggttgaacaataattttggagacaccagttccatgatgaagtaatctagcacagtgtgatggagtcaa |
51511544 |
T |
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| Q |
409 |
aggtgttcttctttcccatttattcacag |
437 |
Q |
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| T |
51511545 |
aggtgttcttctttcccatttattcacag |
51511573 |
T |
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