View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6243_low_2 (Length: 298)

Name: NF6243_low_2
Description: NF6243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6243_low_2
NF6243_low_2
[»] chr2 (2 HSPs)
chr2 (52-298)||(29637163-29637409)
chr2 (81-221)||(23653024-23653163)
[»] chr7 (7 HSPs)
chr7 (81-247)||(22613742-22613906)
chr7 (153-221)||(4530437-4530504)
chr7 (80-247)||(11656413-11656578)
chr7 (81-234)||(13476315-13476467)
chr7 (136-221)||(16061825-16061909)
chr7 (82-191)||(15866018-15866129)
chr7 (136-188)||(48378002-48378054)
[»] scaffold1001 (1 HSPs)
scaffold1001 (111-205)||(2355-2449)
[»] chr4 (3 HSPs)
chr4 (160-262)||(12137502-12137602)
chr4 (111-190)||(11557255-11557334)
chr4 (111-221)||(18219474-18219583)
[»] chr8 (1 HSPs)
chr8 (153-205)||(29295211-29295263)
[»] chr5 (2 HSPs)
chr5 (100-182)||(14137094-14137177)
chr5 (81-182)||(24830748-24830849)
[»] chr3 (2 HSPs)
chr3 (69-243)||(14480294-14480466)
chr3 (136-191)||(14053794-14053849)
[»] chr1 (1 HSPs)
chr1 (62-191)||(10388885-10389015)
[»] scaffold0063 (1 HSPs)
scaffold0063 (136-188)||(27012-27064)
[»] scaffold0061 (2 HSPs)
scaffold0061 (136-188)||(17607-17659)
scaffold0061 (136-188)||(26665-26717)
[»] scaffold1269 (1 HSPs)
scaffold1269 (81-191)||(1238-1349)
[»] chr6 (1 HSPs)
chr6 (81-234)||(7681283-7681434)
[»] scaffold0003 (1 HSPs)
scaffold0003 (136-188)||(131824-131876)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 52 - 298
Target Start/End: Original strand, 29637163 - 29637409
Alignment:
Q  52 tatacaatgataacttatcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29637163 tatacaatgataacttatcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactc 29637262  T
Q  152 atcatttgttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattccttaga 251  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  29637263 atcattagttctctccattactacatctttcatcctaatatcataccctattcttcattcataattttagatgtttacttctccattaacatttcttaga 29637362  T
Q  252 acgtcttccatctatacaaccatgttttacctcaccatcgtcattac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  29637363 acgtcttccatctatacaaccatgttttacctcaccatcgtcattac 29637409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 23653163 - 23653024
Alignment:
Q  81 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 180  Q
    ||||||||| | || ||||| |||| ||  |||| ||| |||| ||| |||||||||| ||||| || ||| ||||| ||||||||||| ||||||||||    
T  23653163 aacatcttacacgagcatatgtacacatcacattactttgttattcattactacatttggaatctactctcgtcattcgttctctccatcactacatctt 23653064  T
Q  181 tcatcctaatatcataccctattcttcattcataatttaag 221  Q
    |||| || |||  |||||| ||||  ||||| |||||||||    
T  23653063 tcattctgatagtataccccattccccattc-taatttaag 23653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 81 - 247
Target Start/End: Complemental strand, 22613906 - 22613742
Alignment:
Q  81 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 180  Q
    ||||||||| | |||||||| |||| ||  |||||||| |||| ||| ||||| |||| ||||| || ||||||||| ||||||||||||||||| ||||    
T  22613906 aacatcttacacgaacatatgtacacatcacattcctttgttattcattactaaatttggaatctactctcatcattcgttctctccattactacctctt 22613807  T
Q  181 tcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattcct 247  Q
    |||| ||||||  |||||||||||| ||||| ||||||||| ||||||| |||| | ||| ||||||    
T  22613806 tcattctaataatataccctattctccattc-taatttaag-tgtttacctctctactaatattcct 22613742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 4530504 - 4530437
Alignment:
Q  153 tcatttgttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaag 221  Q
    ||||| |||||||||||||||||||||||||||||||||  ||||| |||||| ||||| |||||||||    
T  4530504 tcattcgttctctccattactacatctttcatcctaatagtataccatattctccattc-taatttaag 4530437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 11656413 - 11656578
Alignment:
Q  80 taacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatct 179  Q
    |||||||||| | |||||||| |||| ||  |||||||| |||| ||| | ||| |||| ||||| |  ||| |||||  || ||||||||||||| |||    
T  11656413 taacatcttacacgaacatatgtacacatcacattcctttgttattcattgctaaatttggaatctattctcgtcattcattttctccattactacctct 11656512  T
Q  180 ttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattcct 247  Q
    ||||| |||| |  |||||||||||| ||||| ||||||||| ||||||| |||| | ||| ||||||    
T  11656513 ttcattctaacagtataccctattctccattc-taatttaag-tgtttacctctctactaatattcct 11656578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 13476467 - 13476315
Alignment:
Q  81 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttag-aatccacactcatcatttgttctctccattactacatct 179  Q
    ||||||||| | || ||||| |||| ||  |||||||| |||| ||| |||||||||| | |||| || ||| || || |||||||||||||||||| ||    
T  13476467 aacatcttacacgagcatatgtacacatcacattcctttgttattcattactacattttggaatctactctcgtctttcgttctctccattactacacct 13476368  T
Q  180 ttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctc 234  Q
    ||||| ||||||  |||||| || ||| |||| ||||||||| ||||||| ||||    
T  13476367 ttcattctaatagtataccccatcctttattc-taatttaag-tgtttacctctc 13476315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 16061825 - 16061909
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaag 221  Q
    ||||||||| || |||| |||| ||||||||||||||||| |||||||||||| ||  ||||||| || | ||||| |||||||||    
T  16061825 tttagaatctactctcagcattcgttctctccattactacgtctttcatcctagtagtataccctgttatccattc-taatttaag 16061909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 15866129 - 15866018
Alignment:
Q  82 acatcttatatgaacatatatacatatttcattccttagttaatcaatactaca--tttagaatccacactcatcatttgttctctccattactacatct 179  Q
    |||||||||| || ||||| |||| ||   ||||||| |||| ||| |||| ||  |||||||||  | ||| |||||||||||||||||||| || |||    
T  15866129 acatcttatacgagcatatgtacacatcatattccttcgttagtcattactgcaattttagaatcttctctcgtcatttgttctctccattaccacgtct 15866030  T
Q  180 ttcatcctaata 191  Q
    ||||| ||||||    
T  15866029 ttcattctaata 15866018  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 48378002 - 48378054
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 188  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||| ||||    
T  48378002 tttagaatctactctcgtcattcgttctctccattactacgtctttcacccta 48378054  T

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Target: scaffold1001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 2355 - 2449
Alignment:
Q  111 cattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctttcatcctaatatcataccctattct 205  Q
    |||||||| |||| ||| ||||| |||||||||| || ||| |||||  |||||||||||||||| |||||||| ||||||  ||||||||||||    
T  2355 cattcctttgttattcattactaaatttagaatctactctcgtcattcattctctccattactacctctttcattctaatagtataccctattct 2449  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 262
Target Start/End: Original strand, 12137502 - 12137602
Alignment:
Q  160 ttctctccattactacatctttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacattccttagaacgtcttc 259  Q
    |||||||||||||||||||||||||||| |||  ||||||| |||| ||||| |||| ||| |||||||| |||  ||||| |||||||| |||||||||    
T  12137502 ttctctccattactacatctttcatcctgatagtataccctcttctccattc-taatataa-atgtttacctctttattaatattccttataacgtcttc 12137599  T
Q  260 cat 262  Q
    |||    
T  12137600 cat 12137602  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 190
Target Start/End: Original strand, 11557255 - 11557334
Alignment:
Q  111 cattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctttcatcctaat 190  Q
    ||||| || |||| ||| ||||||||||  |||| || ||| ||||| ||||||||||| |||||||||||||| |||||    
T  11557255 cattcttttgttattcattactacattttaaatctactctcgtcattcgttctctccatcactacatctttcattctaat 11557334  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 18219583 - 18219474
Alignment:
Q  111 cattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctttcatcctaatatcataccctattcttcatt 210  Q
    |||||||| |||| ||| |||||||||| ||||  |  ||| ||||| ||||||||||| ||||||| ||||||  |||||  |||||| ||||| ||||    
T  18219583 cattcctttgttattcattactacatttggaatatattctcgtcattcgttctctccatcactacatttttcattttaatagtataccccattctccatt 18219484  T
Q  211 cataatttaag 221  Q
    | |||||||||    
T  18219483 c-taatttaag 18219474  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 29295211 - 29295263
Alignment:
Q  153 tcatttgttctctccattactacatctttcatcctaatatcataccctattct 205  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||| |||||    
T  29295211 tcattcgttctctccattactacatctttcatcctaatagtataccccattct 29295263  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 14137094 - 14137177
Alignment:
Q  100 tatacatatttcattccttagttaatcaatactacattt-agaatccacactcatcatttgttctctccattactacatctttc 182  Q
    |||||||||| ||||||||  |||||||||| | ||||| | |||| || ||| ||||||||||||| ||||||||||||||||    
T  14137094 tatacatattccattccttcattaatcaatattgcattttaaaatctactctcgtcatttgttctcttcattactacatctttc 14137177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 24830849 - 24830748
Alignment:
Q  81 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 180  Q
    ||||||||| |||| ||||| || | ||  |||||||| |||| ||| ||||||||||  ||||||| ||| ||| | ||||||||||||||||| ||||    
T  24830849 aacatcttacatgagcatatgtatacatcacattcctttgttattcattactacatttgtaatccactctcgtcaatcgttctctccattactacttctt 24830750  T
Q  181 tc 182  Q
    ||    
T  24830749 tc 24830748  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 243
Target Start/End: Complemental strand, 14480466 - 14480294
Alignment:
Q  69 tcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctcca 168  Q
    ||||||| || |||||||||| ||||  |||| || | ||  |||||||| |||| ||| ||||||||||  |||  || ||| ||||| ||||||||||    
T  14480466 tcatcattaaataacatcttacatgagaatatgtatacatcacattcctttgttattcattactacatttgtaatatactctcgtcattcgttctctcca 14480367  T
Q  169 ttactacatctttcatcctaatatcataccctattcttcattcataatttaagatgtttacttctccattaacat 243  Q
    ||||||| ||||||    |||||  |||||||||||| || || ||||||||| ||||||| |||| ||||||||    
T  14480366 ttactacttctttccatttaatagtataccctattctccactc-taatttaag-tgtttacctctctattaacat 14480294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 14053849 - 14053794
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatcctaata 191  Q
    ||||||||| || ||| |||||  |||||||||||||||| |||||||||||||||    
T  14053849 tttagaatctactctcgtcattcattctctccattactacgtctttcatcctaata 14053794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 191
Target Start/End: Original strand, 10388885 - 10389015
Alignment:
Q  62 taacttatcatcatcaactaacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttag-aatccacactcatcatttgt 160  Q
    |||||| ||||||| || |||||||||||  || ||||| |||| ||  |||||||| |||| ||| |||| ||||| | |||| ||  || ||||| ||    
T  10388885 taacttctcatcattaattaacatcttatgcgagcatatttacacatcacattccttcgttattcattactgcattttggaatctaccatcgtcattcgt 10388984  T
Q  161 tctctccattactacatctttcatcctaata 191  Q
    ||| |||||| ||||||||||||||||||||    
T  10388985 tctttccatttctacatctttcatcctaata 10389015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 27064 - 27012
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 188  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  27064 tttagaatctactctcgtcattcgttctctccattactacgtctttcatccta 27012  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 17659 - 17607
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 188  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  17659 tttagaatctactctcgtcattcgttctctccattactacgtctttcatccta 17607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 26717 - 26665
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 188  Q
    ||||||||| || ||| ||||| ||||||||||||||||| ||||||||||||    
T  26717 tttagaatctactctcgtcattcgttctctccattactacgtctttcatccta 26665  T

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Target: scaffold1269 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 191
Target Start/End: Original strand, 1238 - 1349
Alignment:
Q  81 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacattt-agaatccacactcatcatttgttctctccattactacatct 179  Q
    ||||||||||| || ||||| |||| ||   ||||||| |||| ||| |||| ||||| |||||| || ||| ||||| |||||||  |||||||| |||    
T  1238 aacatcttatacgagcatatgtacacatcatattccttcgttactcattactgcattttagaatctactctcgtcattcgttctctttattactacgtct 1337  T
Q  180 ttcatcctaata 191  Q
    ||||||||||||    
T  1338 ttcatcctaata 1349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 234
Target Start/End: Complemental strand, 7681434 - 7681283
Alignment:
Q  81 aacatcttatatgaacatatatacatatttcattccttagttaatcaatactacatttagaatccacactcatcatttgttctctccattactacatctt 180  Q
    ||||||||| |||| ||||| || | ||| |||||||| |||| ||| ||||||||||  |||| || ||  ||| |  |||||||||||||||| ||||    
T  7681434 aacatcttacatgagcatatgtatacattacattcctttgttattcattactacatttgtaatctactcttgtcaatcattctctccattactacttctt 7681335  T
Q  181 tcatcctaatatcataccctattcttcattcataatttaagatgtttacttctc 234  Q
    ||   ||||||  ||||||||| || ||||| ||||||||| ||||||| ||||    
T  7681334 tccatctaatagtataccctatcctccattc-taatttaag-tgtttacctctc 7681283  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 131824 - 131876
Alignment:
Q  136 tttagaatccacactcatcatttgttctctccattactacatctttcatccta 188  Q
    ||||||||| ||  || ||||| ||||||||||||||||| ||||||||||||    
T  131824 tttagaatctactatcgtcattcgttctctccattactacgtctttcatccta 131876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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