View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6243_low_4 (Length: 250)

Name: NF6243_low_4
Description: NF6243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6243_low_4
NF6243_low_4
[»] chr2 (3 HSPs)
chr2 (89-239)||(29637500-29637650)
chr2 (1-67)||(29637442-29637508)
chr2 (60-116)||(44586043-44586099)
[»] chr4 (2 HSPs)
chr4 (15-239)||(30275518-30275738)
chr4 (183-232)||(18556394-18556442)
[»] chr3 (2 HSPs)
chr3 (29-225)||(19908101-19908294)
chr3 (183-239)||(14481092-14481147)
[»] chr5 (1 HSPs)
chr5 (60-113)||(13937401-13937454)
[»] chr6 (1 HSPs)
chr6 (183-232)||(19546818-19546866)


Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 89 - 239
Target Start/End: Original strand, 29637500 - 29637650
Alignment:
Q  89 ataatctcacattatcattactttcaacgtcagaaattttctccactaaaatttcattacactttagggttctaatatctcattaccggtcattattatt 188  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29637500 ataatctcacattatcattactttcaacgtcagaaactttctccactaaaatttcattacactttagggttctaatatctcattaccggtcattactatt 29637599  T
Q  189 attatcgtcaatcattataaactattatctcttatctactttctcattcat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29637600 attatcgtcaatcattataaactattatctcttatctactttctcattcat 29637650  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29637442 - 29637508
Alignment:
Q  1 ctttataatatatcacttcatctcacgttcatcgtcatttgtaacatcgaccatttcaataatctca 67  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  29637442 ctttatattatattacttcatctcacgttcatcgtcatttgtaacatcaaccatttcaataatctca 29637508  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 44586099 - 44586043
Alignment:
Q  60 taatctcaaattcattttaatttaaagttataatctcacattatcattactttcaac 116  Q
    |||||| || |||||| |||||||||||||| ||||||| | ||||||| |||||||    
T  44586099 taatcttaacttcattctaatttaaagttattatctcacctcatcattaatttcaac 44586043  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 30275738 - 30275518
Alignment:
Q  15 acttcatctcacgttcatcgtcatttgtaacatcgaccatttcaataatctcaaattcattttaatttaaagttataatctcacattatcattactttca 114  Q
    ||||| |||||||||||||||||| | ||||| |||||||| | ||||||| || |||||| |||||||||||||| || |||| ||||||||||||||     
T  30275738 acttcgtctcacgttcatcgtcatctataacaccgaccattcctataatcttaacttcattctaatttaaagttattatttcaccttatcattactttcg 30275639  T
Q  115 acgtcagaaattttctccactaaaatttcattacactttagggttctaatatctcattaccggtcattattattattatcgtcaatcattataaactatt 214  Q
    ||||||  || |||| ||||||||| ||||||| | ||||||||| ||||||||| ||||| |||    |||||||||||||||| ||||||| ||||||    
T  30275638 acgtcatcaactttc-ccactaaaacttcattatattttagggttttaatatctcgttaccagtc---gttattattatcgtcaaacattatatactatt 30275543  T
Q  215 atctcttatctactttctcattcat 239  Q
    ||||||||||| |||| | ||||||    
T  30275542 atctcttatcttcttttttattcat 30275518  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 18556442 - 18556394
Alignment:
Q  183 attattattatcgtcaatcattataaactattatctcttatctactttct 232  Q
    ||||||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  18556442 attattattatcgtcaaacattat-aactattacctcttatctgctttct 18556394  T

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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 19908294 - 19908101
Alignment:
Q  29 tcatcgtcatttgtaacatcgaccatttcaataatctcaaattcattttaatttaaagttataatctcacattatcattactttcaacgtcagaaatttt 128  Q
    |||| ||||||| ||| |||||||||||| | ||||| || ||  || |||||||||||||| ||||||| ||||| |||||||| | ||||| || |||    
T  19908294 tcattgtcatttataatatcgaccatttccaaaatcttaacttatttctaatttaaagttattatctcaccttatcgttactttcgatgtcagcaacttt 19908195  T
Q  129 ctccactaaaatttcattacactttagggttctaatatctcattaccggtcattattattattatcgtcaatcattataaactattatctcttatct 225  Q
    | ||| ||||| ||||||||| |||||||||||||| ||||||||||  ||   |||||| ||||| ||||||||||||||| ||||| | ||||||    
T  19908194 ccccaataaaacttcattacattttagggttctaatctctcattaccattc---attattgttatcatcaatcattataaaccattatttgttatct 19908101  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 14481147 - 14481092
Alignment:
Q  183 attattattatcgtcaatcattataaactattatctcttatctactttctcattcat 239  Q
    ||||||||||||||||| |||||| |||||||| ||||||||  ||||| |||||||    
T  14481147 attattattatcgtcaaccattat-aactattacctcttatcctctttcccattcat 14481092  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 13937401 - 13937454
Alignment:
Q  60 taatctcaaattcattttaatttaaagttataatctcacattatcattactttc 113  Q
    |||||| || |||||| |||||||||||||| ||||||| ||||||||||||||    
T  13937401 taatcttaacttcattctaatttaaagttattatctcaccttatcattactttc 13937454  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 19546866 - 19546818
Alignment:
Q  183 attattattatcgtcaatcattataaactattatctcttatctactttct 232  Q
    ||||||||||||||||| |||||| |||||||| ||||||||| ||||||    
T  19546866 attattattatcgtcaaacattat-aactattacctcttatctgctttct 19546818  T

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