View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6243_low_5 (Length: 241)

Name: NF6243_low_5
Description: NF6243
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6243_low_5
NF6243_low_5
[»] chr2 (2 HSPs)
chr2 (6-241)||(38412389-38412624)
chr2 (6-241)||(8360721-8360955)
[»] chr1 (1 HSPs)
chr1 (6-241)||(34612022-34612257)
[»] chr4 (1 HSPs)
chr4 (6-241)||(26908706-26908941)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 38412624 - 38412389
Alignment:
Q  6 tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt 105  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38412624 tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt 38412525  T
Q  106 caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38412524 caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 38412425  T
Q  206 atttttattaatcccatttagataataaaaatcgat 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  38412424 atttttattaatcccatttagataataaaaatcgat 38412389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 8360955 - 8360721
Alignment:
Q  6 tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt 105  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8360955 tggacttcatcatcactatttcgttttgagcctttcatttattt-cttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt 8360857  T
Q  106 caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 205  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  8360856 caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatactttagatagttt 8360757  T
Q  206 atttttattaatcccatttagataataaaaatcgat 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  8360756 atttttattaatcccatttagataataaaaatcgat 8360721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 34612022 - 34612257
Alignment:
Q  6 tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt 105  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34612022 tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt 34612121  T
Q  106 caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34612122 caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 34612221  T
Q  206 atttttattaatcccatttagataataaaaatcgat 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  34612222 atttttattaatcccatttagataataaaaatcgat 34612257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 241
Target Start/End: Complemental strand, 26908941 - 26908706
Alignment:
Q  6 tggacatcatcatcactatttcgttttgagcctttaatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt 105  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26908941 tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt 26908842  T
Q  106 caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26908841 caattcatatatgttggcttaattttttactattgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt 26908742  T
Q  206 atttttattaatcccatttagataataaaaatcgat 241  Q
    ||||||||||||||||||||||||||||||||||||    
T  26908741 atttttattaatcccatttagataataaaaatcgat 26908706  T

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